Wall clock time and date at job start Sun Mar 29 2020 21:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47530 * 2 1 4 4 N 1.31901 * 120.17935 * 263.57888 * 3 2 1 5 5 N 1.28276 * 122.33282 * 179.74139 * 4 3 2 6 6 C 1.31938 * 122.53807 * 0.54522 * 5 4 3 7 7 C 1.50699 * 120.00882 * 179.75413 * 6 5 4 8 8 C 1.38453 * 119.98469 * 359.72971 * 6 5 4 9 9 C 1.39824 * 120.18228 * 83.84750 * 3 2 1 10 10 C 1.47987 * 121.15083 * 359.96364 * 9 3 2 11 11 O 1.21568 * 119.99933 * 354.17292 * 10 9 3 12 12 N 1.34773 * 120.00033 * 174.17752 * 10 9 3 13 13 C 1.36793 * 120.00319 * 180.02562 * 12 10 9 14 14 H 1.08009 * 119.99271 * 359.97438 * 13 12 10 15 15 C 1.39097 * 120.00512 * 179.97438 * 13 12 10 16 16 N 1.31328 * 119.99875 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00193 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47201 * 90.00053 * 17 15 13 19 19 H 1.48497 * 109.46950 * 209.99753 * 17 15 13 20 20 H 1.48495 * 109.47156 * 329.99653 * 17 15 13 21 21 H 1.08996 * 109.46773 * 300.00319 * 1 2 3 22 22 H 1.09008 * 109.46680 * 59.99859 * 1 2 3 23 23 H 1.08993 * 109.46812 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47488 * 239.99851 * 2 1 3 25 25 H 1.08998 * 109.47160 * 119.99970 * 2 1 3 26 26 H 1.09001 * 109.47426 * 269.97915 * 7 6 5 27 27 H 1.09001 * 109.47175 * 29.98241 * 7 6 5 28 28 H 1.09003 * 109.47381 * 149.97373 * 7 6 5 29 29 H 1.07999 * 121.09803 * 179.97438 * 8 6 5 30 30 H 0.97003 * 119.99622 * 359.97438 * 12 10 9 31 31 H 0.97001 * 120.00061 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3737 2.0034 -1.1331 5 7 2.8016 3.2117 -1.1815 6 6 2.9424 3.9585 -0.1029 7 6 3.4556 5.3701 -0.2253 8 6 2.6182 3.4450 1.1413 9 6 2.1447 2.1267 1.2017 10 6 1.7760 1.5041 2.4926 11 8 1.2685 0.3996 2.5118 12 7 2.0029 2.1615 3.6470 13 6 1.6626 1.5858 4.8404 14 1 1.2118 0.6045 4.8573 15 6 1.8972 2.2641 6.0319 16 7 2.4459 3.4571 6.0112 17 14 1.4319 1.4782 7.6613 18 1 2.5790 0.6871 8.1748 19 1 1.0840 2.5387 8.6409 20 1 0.2628 0.5841 7.4637 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.5426 5.3699 -0.1444 27 1 3.1632 5.7805 -1.1919 28 1 3.0320 5.9811 0.5718 29 1 2.7269 4.0401 2.0359 30 1 2.4081 3.0427 3.6317 31 1 2.6098 3.9300 6.8421 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228445979.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:16 Heat of formation + Delta-G solvation = 5.203255 kcal Electronic energy + Delta-G solvation = -16287.288389 eV Core-core repulsion = 13568.801285 eV Total energy + Delta-G solvation = -2718.487103 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78724 -38.22804 -35.06004 -33.95003 -33.08517 -31.84181 -30.75186 -27.68596 -25.69755 -24.54959 -23.44952 -21.42279 -19.82585 -18.41095 -17.09911 -16.34844 -15.48461 -15.05320 -14.86232 -14.14257 -13.88003 -13.67486 -13.55302 -13.23116 -12.83772 -12.62837 -12.11312 -11.92211 -11.82654 -11.33711 -11.32574 -10.64373 -10.57102 -10.47747 -10.33744 -9.88029 -9.55968 -9.55170 -9.07608 -8.42919 -8.29924 -6.81038 -4.09886 0.87471 1.26541 3.00546 3.09369 3.14536 3.54748 3.88731 4.18283 4.30843 4.50721 4.76659 4.91449 5.03889 5.14499 5.33967 5.56840 5.62168 5.74810 5.83006 5.91739 5.93964 6.04977 6.19889 6.32373 6.46994 6.57991 6.81847 6.90093 7.19862 7.70251 8.24528 8.81391 9.10488 9.14877 9.71457 10.34630 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.007669 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.426239 B = 3650.406440 C = 4595.773215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 C 0.105 3.895 4 N -0.250 5.250 5 N -0.256 5.256 6 C 0.058 3.942 7 C -0.096 4.096 8 C -0.116 4.116 9 C -0.088 4.088 10 C 0.457 3.543 11 O -0.578 6.578 12 N -0.529 5.529 13 C -0.289 4.289 14 H 0.114 0.886 15 C 0.025 3.975 16 N -0.878 5.878 17 Si 0.939 3.061 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 H 0.067 0.933 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.393 0.607 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 2.227 -5.568 6.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 C -0.042 4.042 4 N -0.091 5.091 5 N -0.099 5.099 6 C -0.086 4.086 7 C -0.154 4.154 8 C -0.147 4.147 9 C -0.103 4.103 10 C 0.245 3.755 11 O -0.465 6.465 12 N -0.162 5.162 13 C -0.420 4.420 14 H 0.132 0.868 15 C -0.180 4.180 16 N -0.517 5.517 17 Si 0.764 3.236 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.189 1.189 21 H 0.086 0.914 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.131 0.869 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.167 0.833 30 H 0.228 0.772 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.624 1.534 -7.021 7.213 hybrid contribution 0.018 0.565 2.439 2.504 sum 0.642 2.099 -4.582 5.080 Atomic orbital electron populations 1.21561 0.94042 1.01707 1.01526 1.20589 0.96943 0.89112 1.04041 1.22994 0.93889 0.98594 0.88722 1.72850 1.08559 1.03270 1.24402 1.72708 1.10345 0.99883 1.26976 1.22670 0.97039 0.98490 0.90439 1.20623 1.01530 0.89548 1.03731 1.22485 0.97563 0.95393 0.99242 1.21454 0.97679 0.94225 0.96944 1.17313 0.88124 0.87531 0.82552 1.90567 1.49787 1.20255 1.85926 1.41930 1.51064 1.18105 1.05090 1.19955 1.36706 1.03387 0.81917 0.86849 1.25496 0.96294 0.95635 1.00560 1.69564 1.40027 1.12173 1.29916 0.85707 0.79403 0.78713 0.79746 1.19904 1.20512 1.18907 0.91431 0.94036 0.92398 0.91453 0.86932 0.90181 0.90324 0.90351 0.83346 0.77187 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.50 37.16 0.35 -1.87 16 2 C -0.07 -1.23 5.48 -27.88 -0.15 -1.38 16 3 C 0.10 2.05 6.16 -81.97 -0.51 1.55 16 4 N -0.25 -4.92 11.42 33.82 0.39 -4.53 16 5 N -0.26 -4.76 11.41 33.57 0.38 -4.37 16 6 C 0.06 0.94 6.86 -82.47 -0.57 0.38 16 7 C -0.10 -1.11 10.19 36.01 0.37 -0.75 16 8 C -0.12 -2.04 9.34 -38.76 -0.36 -2.40 16 9 C -0.09 -1.78 5.92 -104.57 -0.62 -2.40 16 10 C 0.46 10.54 7.68 -12.27 -0.09 10.45 16 11 O -0.58 -14.36 11.59 5.31 0.06 -14.30 16 12 N -0.53 -12.63 5.23 -11.80 -0.06 -12.69 16 13 C -0.29 -7.41 9.68 -15.02 -0.15 -7.56 16 14 H 0.11 3.01 7.15 -52.48 -0.38 2.63 16 15 C 0.03 0.62 5.50 -17.45 -0.10 0.52 16 16 N -0.88 -21.73 13.05 55.50 0.72 -21.01 16 17 Si 0.94 19.18 29.55 -169.99 -5.02 14.16 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H 0.07 1.31 6.88 -51.93 -0.36 0.95 16 22 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.11 2.23 5.92 -51.93 -0.31 1.92 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.15 2.35 6.65 -52.49 -0.35 2.00 16 30 H 0.39 8.90 6.11 -40.82 -0.25 8.65 16 31 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -28.07 269.71 -4.59 -32.67 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.31 Total: 9.47 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.82 Total: -3.46 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 1.43 Total: -42.60 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.06 Total: -14.30 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.07 -4.59 -32.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228445979.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.868 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds