Wall clock time and date at job start Sun Mar 29 2020 21:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47530 * 2 1 4 4 N 1.31901 * 120.17935 * 263.57888 * 3 2 1 5 5 N 1.28276 * 122.33282 * 179.74139 * 4 3 2 6 6 C 1.31938 * 122.53807 * 0.54522 * 5 4 3 7 7 C 1.50699 * 120.00882 * 179.75413 * 6 5 4 8 8 C 1.38453 * 119.98469 * 359.72971 * 6 5 4 9 9 C 1.39824 * 120.18228 * 83.84750 * 3 2 1 10 10 C 1.47987 * 121.15083 * 359.96364 * 9 3 2 11 11 O 1.21568 * 119.99933 * 354.17292 * 10 9 3 12 12 N 1.34773 * 120.00033 * 174.17752 * 10 9 3 13 13 C 1.36793 * 120.00319 * 180.02562 * 12 10 9 14 14 H 1.08009 * 119.99271 * 359.97438 * 13 12 10 15 15 C 1.39097 * 120.00512 * 179.97438 * 13 12 10 16 16 N 1.31328 * 119.99875 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00193 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47201 * 90.00053 * 17 15 13 19 19 H 1.48497 * 109.46950 * 209.99753 * 17 15 13 20 20 H 1.48495 * 109.47156 * 329.99653 * 17 15 13 21 21 H 1.08996 * 109.46773 * 300.00319 * 1 2 3 22 22 H 1.09008 * 109.46680 * 59.99859 * 1 2 3 23 23 H 1.08993 * 109.46812 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47488 * 239.99851 * 2 1 3 25 25 H 1.08998 * 109.47160 * 119.99970 * 2 1 3 26 26 H 1.09001 * 109.47426 * 269.97915 * 7 6 5 27 27 H 1.09001 * 109.47175 * 29.98241 * 7 6 5 28 28 H 1.09003 * 109.47381 * 149.97373 * 7 6 5 29 29 H 1.07999 * 121.09803 * 179.97438 * 8 6 5 30 30 H 0.97003 * 119.99622 * 359.97438 * 12 10 9 31 31 H 0.97001 * 120.00061 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3737 2.0034 -1.1331 5 7 2.8016 3.2117 -1.1815 6 6 2.9424 3.9585 -0.1029 7 6 3.4556 5.3701 -0.2253 8 6 2.6182 3.4450 1.1413 9 6 2.1447 2.1267 1.2017 10 6 1.7760 1.5041 2.4926 11 8 1.2685 0.3996 2.5118 12 7 2.0029 2.1615 3.6470 13 6 1.6626 1.5858 4.8404 14 1 1.2118 0.6045 4.8573 15 6 1.8972 2.2641 6.0319 16 7 2.4459 3.4571 6.0112 17 14 1.4319 1.4782 7.6613 18 1 2.5790 0.6871 8.1748 19 1 1.0840 2.5387 8.6409 20 1 0.2628 0.5841 7.4637 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.5426 5.3699 -0.1444 27 1 3.1632 5.7805 -1.1919 28 1 3.0320 5.9811 0.5718 29 1 2.7269 4.0401 2.0359 30 1 2.4081 3.0427 3.6317 31 1 2.6098 3.9300 6.8421 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228445979.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:15 Heat of formation + Delta-G solvation = -13.104170 kcal Electronic energy + Delta-G solvation = -16288.082258 eV Core-core repulsion = 13568.801285 eV Total energy + Delta-G solvation = -2719.280973 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.29932 -40.01572 -36.67490 -35.58709 -34.62817 -33.53144 -32.26531 -28.95869 -27.43832 -26.07320 -24.93567 -22.89533 -21.53720 -20.23855 -18.61511 -18.02216 -16.99851 -16.78249 -16.36012 -15.82955 -15.43548 -15.34385 -15.01076 -14.70125 -14.11515 -13.96198 -13.59584 -13.22507 -13.16192 -12.99949 -12.71898 -12.52789 -12.15791 -12.00526 -11.78915 -11.57465 -11.14167 -11.12468 -10.48900 -10.21937 -10.11706 -8.63081 -6.04350 -0.65220 -0.16864 1.38233 1.42890 1.54894 1.92824 2.20967 2.56218 2.80005 2.95024 3.17378 3.35774 3.45284 3.75349 3.97785 4.12341 4.35931 4.42102 4.49248 4.64649 4.75709 4.78368 4.95423 5.04007 5.09035 5.28008 5.30660 5.39391 5.42904 5.83375 6.40602 6.94924 7.30800 7.63358 7.88288 8.53226 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.007669 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.426239 B = 3650.406440 C = 4595.773215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 C 0.098 3.902 4 N -0.261 5.261 5 N -0.264 5.264 6 C 0.065 3.935 7 C -0.095 4.095 8 C -0.101 4.101 9 C -0.112 4.112 10 C 0.461 3.539 11 O -0.599 6.599 12 N -0.538 5.538 13 C -0.330 4.330 14 H 0.093 0.907 15 C -0.005 4.005 16 N -0.901 5.901 17 Si 0.998 3.002 18 H -0.269 1.269 19 H -0.269 1.269 20 H -0.269 1.269 21 H 0.037 0.963 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.167 0.833 30 H 0.397 0.603 31 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 3.390 -6.131 7.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 C -0.048 4.048 4 N -0.101 5.101 5 N -0.106 5.106 6 C -0.080 4.080 7 C -0.153 4.153 8 C -0.131 4.131 9 C -0.126 4.126 10 C 0.249 3.751 11 O -0.486 6.486 12 N -0.172 5.172 13 C -0.459 4.459 14 H 0.111 0.889 15 C -0.208 4.208 16 N -0.540 5.540 17 Si 0.821 3.179 18 H -0.194 1.194 19 H -0.193 1.193 20 H -0.194 1.194 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.184 0.816 30 H 0.233 0.767 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.078 2.708 -7.601 8.141 hybrid contribution -0.077 0.267 2.392 2.408 sum 1.001 2.974 -5.210 6.082 Atomic orbital electron populations 1.21490 0.93323 1.02747 1.00540 1.20570 0.97520 0.88512 1.03963 1.23166 0.93886 0.99196 0.88564 1.72854 1.09074 1.04003 1.24202 1.72675 1.10167 0.99728 1.28067 1.23353 0.95390 1.00175 0.89033 1.20830 1.02707 0.86393 1.05368 1.22793 0.95418 0.94253 1.00664 1.21313 0.99811 0.95758 0.95704 1.17771 0.86775 0.87159 0.83365 1.90547 1.50154 1.21285 1.86652 1.41857 1.52096 1.18403 1.04891 1.19877 1.39307 1.03462 0.83290 0.88929 1.26198 0.95703 0.95994 1.02876 1.69602 1.40654 1.12846 1.30866 0.84837 0.78896 0.78023 0.76137 1.19423 1.19340 1.19364 0.94344 0.92867 0.90427 0.89320 0.89046 0.88162 0.89044 0.88210 0.81585 0.76729 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 9.50 71.98 0.68 -3.46 16 2 C -0.07 -2.40 5.48 29.85 0.16 -2.23 16 3 C 0.10 3.80 6.16 42.93 0.26 4.07 16 4 N -0.26 -9.88 11.42 -46.90 -0.54 -10.41 16 5 N -0.26 -9.22 11.41 -47.72 -0.54 -9.77 16 6 C 0.07 1.95 6.86 42.59 0.29 2.24 16 7 C -0.09 -1.83 10.19 71.24 0.73 -1.10 16 8 C -0.10 -3.36 9.34 22.80 0.21 -3.15 16 9 C -0.11 -4.47 5.92 -19.83 -0.12 -4.59 16 10 C 0.46 21.74 7.68 86.83 0.67 22.41 16 11 O -0.60 -30.71 11.59 -3.93 -0.05 -30.75 16 12 N -0.54 -26.23 5.23 -309.52 -1.62 -27.85 16 13 C -0.33 -17.36 9.68 84.13 0.81 -16.55 16 14 H 0.09 5.14 7.15 -2.91 -0.02 5.12 16 15 C 0.00 -0.24 5.50 84.97 0.47 0.23 16 16 N -0.90 -44.47 13.05 21.69 0.28 -44.18 16 17 Si 1.00 39.36 29.55 68.60 2.03 41.39 16 18 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 19 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 H 0.04 1.50 6.88 -2.39 -0.02 1.48 16 22 H 0.05 1.63 8.14 -2.38 -0.02 1.62 16 23 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.09 3.69 5.92 -2.39 -0.01 3.68 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 1.55 8.09 -2.39 -0.02 1.53 16 29 H 0.17 4.92 6.65 -2.91 -0.02 4.90 16 30 H 0.40 18.13 6.11 -92.71 -0.57 17.56 16 31 H 0.29 13.07 8.31 -92.71 -0.77 12.30 16 Total: -1.00 -60.65 269.71 4.34 -56.32 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.60 Total: 27.40 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 4.17 Total: -2.13 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -2.42 Total: -92.22 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.05 Total: -30.75 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -60.65 4.34 -56.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228445979.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.214 kcal (2) G-P(sol) polarization free energy of solvation -60.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds