Wall clock time and date at job start Sun Mar 29 2020 21:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38774 * 119.90022 * 2 1 4 4 N 1.31774 * 120.12204 * 179.97438 * 3 2 1 5 5 C 1.33028 * 119.92851 * 0.02562 * 4 3 2 6 6 C 1.48146 * 120.09661 * 180.02562 * 5 4 3 7 7 O 1.21523 * 120.00021 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00016 * 359.72526 * 6 5 4 9 9 C 1.46504 * 119.99858 * 180.27150 * 8 6 5 10 10 C 1.53004 * 109.46929 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.46843 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99570 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99769 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47112 * 90.00199 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00310 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99931 * 15 13 11 19 19 C 1.39403 * 119.80642 * 0.27989 * 5 4 3 20 20 N 1.32100 * 119.90912 * 179.97438 * 2 1 3 21 21 H 1.09008 * 109.47159 * 90.00399 * 1 2 3 22 22 H 1.09003 * 109.47014 * 209.99547 * 1 2 3 23 23 H 1.08997 * 109.47440 * 330.00400 * 1 2 3 24 24 H 1.08004 * 119.94317 * 359.97438 * 3 2 1 25 25 H 0.97001 * 119.99727 * 0.28049 * 8 6 5 26 26 H 1.08998 * 109.47306 * 300.00567 * 9 8 6 27 27 H 1.08997 * 109.46860 * 60.00391 * 9 8 6 28 28 H 1.09007 * 109.46621 * 300.00188 * 10 9 8 29 29 H 1.08997 * 109.46991 * 59.99937 * 10 9 8 30 30 H 0.97005 * 120.00032 * 179.97438 * 14 13 11 31 31 H 1.08002 * 120.05978 * 179.70746 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0578 0.0005 6 6 5.6661 0.0592 0.0017 7 8 6.2747 -0.9926 0.0012 8 7 6.3389 1.2270 -0.0029 9 6 7.8039 1.2283 -0.0078 10 6 8.3126 2.6713 -0.0117 11 6 9.8196 2.6727 -0.0173 12 1 10.3604 1.7378 -0.0177 13 6 10.5078 3.8674 -0.0221 14 7 11.8229 3.8686 -0.0265 15 14 9.5723 5.4843 -0.0223 16 1 9.3292 5.9156 1.3777 17 1 10.3715 6.5184 -0.7272 18 1 8.2726 5.3041 -0.7176 19 6 3.4867 -1.1489 -0.0059 20 7 2.1657 -1.1451 0.0005 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 1.6562 2.1369 -0.0004 25 1 5.8531 2.0666 -0.0028 26 1 8.1707 0.7165 0.8819 27 1 8.1647 0.7131 -0.8980 28 1 7.9457 3.1834 -0.9013 29 1 7.9517 3.1862 0.8787 30 1 12.3072 4.7091 -0.0303 31 1 4.0251 -2.0852 -0.0107 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230074771.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:17 Heat of formation + Delta-G solvation = -0.029612 kcal Electronic energy + Delta-G solvation = -15410.647036 eV Core-core repulsion = 12691.933018 eV Total energy + Delta-G solvation = -2718.714018 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.47730 -39.10103 -35.19165 -34.82495 -33.10171 -32.78105 -30.32913 -28.65375 -25.29641 -24.78223 -23.48441 -20.93676 -20.66582 -18.24049 -17.67293 -16.86908 -16.17491 -15.71266 -15.38226 -14.85376 -14.80729 -14.17192 -13.61160 -13.53763 -13.00421 -12.93394 -12.80575 -12.60086 -11.92652 -11.50407 -11.44605 -11.22529 -10.46500 -10.41269 -10.07355 -9.91311 -9.49650 -9.37536 -9.25434 -8.66985 -8.57522 -6.11380 -4.11713 0.17250 0.78533 2.72468 3.22544 3.26135 3.33910 3.35679 3.62254 3.75308 3.85540 4.14530 4.38124 4.52351 4.75817 4.97021 5.11306 5.18675 5.21699 5.27845 5.54043 5.99582 6.08035 6.16273 6.52719 6.63317 6.86690 7.10285 7.21625 7.37200 7.65134 7.81301 8.34721 8.44737 8.92565 9.48729 11.01553 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.044705 B = 0.004662 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.175712 B = 6004.686986 C = 6605.103740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.094 3.906 3 C 0.050 3.950 4 N -0.409 5.409 5 C 0.028 3.972 6 C 0.565 3.435 7 O -0.535 6.535 8 N -0.701 5.701 9 C 0.127 3.873 10 C -0.023 4.023 11 C -0.523 4.523 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.881 3.119 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.113 3.887 20 N -0.443 5.443 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.176 0.824 25 H 0.407 0.593 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.023 0.977 29 H 0.019 0.981 30 H 0.265 0.735 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.245 -4.375 0.004 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.048 4.048 3 C -0.113 4.113 4 N -0.126 5.126 5 C -0.113 4.113 6 C 0.348 3.652 7 O -0.412 6.412 8 N -0.350 5.350 9 C 0.005 3.995 10 C -0.060 4.060 11 C -0.562 4.562 12 H 0.095 0.905 13 C -0.132 4.132 14 N -0.536 5.536 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.047 4.047 20 N -0.158 5.158 21 H 0.104 0.896 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.193 0.807 25 H 0.242 0.758 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.538 -5.008 0.006 23.088 hybrid contribution -0.542 1.412 0.009 1.513 sum -23.081 -3.597 0.015 23.359 Atomic orbital electron populations 1.20746 0.87312 1.04251 1.03774 1.22653 0.98809 0.89813 0.93533 1.23695 0.90253 0.99433 0.97884 1.68369 1.09127 1.28838 1.06225 1.22390 0.96407 0.90831 1.01627 1.17636 0.84618 0.84902 0.78087 1.90796 1.68267 1.31274 1.50860 1.46225 1.09313 1.08045 1.71399 1.21647 0.75276 1.00558 1.01987 1.19806 0.98031 0.91143 0.97050 1.20905 0.88551 0.94941 1.51773 0.90542 1.24992 0.94765 0.99158 0.94321 1.69903 1.06321 1.27051 1.50371 0.86758 0.80326 0.83511 0.78560 1.20183 1.21247 1.19004 1.23842 0.89789 0.99509 0.91516 1.68465 1.08370 1.28989 1.10023 0.89582 0.89891 0.89875 0.80738 0.75827 0.91493 0.91464 0.95852 0.96286 0.92529 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.19 36.01 0.37 -0.17 16 2 C 0.09 0.87 6.79 -82.28 -0.56 0.31 16 3 C 0.05 0.48 10.88 -17.38 -0.19 0.29 16 4 N -0.41 -5.25 9.71 -9.61 -0.09 -5.34 16 5 C 0.03 0.40 6.75 -82.85 -0.56 -0.16 16 6 C 0.57 9.71 7.81 -12.19 -0.10 9.62 16 7 O -0.53 -10.54 16.35 5.35 0.09 -10.45 16 8 N -0.70 -12.29 5.55 -61.15 -0.34 -12.63 16 9 C 0.13 2.61 5.61 -4.04 -0.02 2.59 16 10 C -0.02 -0.52 4.16 -27.88 -0.12 -0.64 16 11 C -0.52 -14.67 9.66 -34.44 -0.33 -15.01 16 12 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 15 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 19 C 0.11 1.45 10.77 -17.00 -0.18 1.26 16 20 N -0.44 -5.18 10.41 -8.95 -0.09 -5.27 16 21 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 24 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 25 H 0.41 6.48 7.82 -40.82 -0.32 6.16 16 26 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 29 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.18 2.16 7.65 -52.49 -0.40 1.76 16 LS Contribution 277.55 15.07 4.18 4.18 Total: -1.00 -32.73 277.55 -5.55 -38.28 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -3.61 Total: 1.35 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.79 Total: 0.00 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.25 Total: -49.84 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.73 -5.55 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230074771.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.249 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds