Wall clock time and date at job start Sun Mar 29 2020 21:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38774 * 119.90022 * 2 1 4 4 N 1.31774 * 120.12204 * 179.97438 * 3 2 1 5 5 C 1.33028 * 119.92851 * 0.02562 * 4 3 2 6 6 C 1.48146 * 120.09661 * 180.02562 * 5 4 3 7 7 O 1.21523 * 120.00021 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00016 * 359.72526 * 6 5 4 9 9 C 1.46504 * 119.99858 * 180.27150 * 8 6 5 10 10 C 1.53004 * 109.46929 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.46843 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99570 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99769 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47112 * 90.00199 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00310 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99931 * 15 13 11 19 19 C 1.39403 * 119.80642 * 0.27989 * 5 4 3 20 20 N 1.32100 * 119.90912 * 179.97438 * 2 1 3 21 21 H 1.09008 * 109.47159 * 90.00399 * 1 2 3 22 22 H 1.09003 * 109.47014 * 209.99547 * 1 2 3 23 23 H 1.08997 * 109.47440 * 330.00400 * 1 2 3 24 24 H 1.08004 * 119.94317 * 359.97438 * 3 2 1 25 25 H 0.97001 * 119.99727 * 0.28049 * 8 6 5 26 26 H 1.08998 * 109.47306 * 300.00567 * 9 8 6 27 27 H 1.08997 * 109.46860 * 60.00391 * 9 8 6 28 28 H 1.09007 * 109.46621 * 300.00188 * 10 9 8 29 29 H 1.08997 * 109.46991 * 59.99937 * 10 9 8 30 30 H 0.97005 * 120.00032 * 179.97438 * 14 13 11 31 31 H 1.08002 * 120.05978 * 179.70746 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0578 0.0005 6 6 5.6661 0.0592 0.0017 7 8 6.2747 -0.9926 0.0012 8 7 6.3389 1.2270 -0.0029 9 6 7.8039 1.2283 -0.0078 10 6 8.3126 2.6713 -0.0117 11 6 9.8196 2.6727 -0.0173 12 1 10.3604 1.7378 -0.0177 13 6 10.5078 3.8674 -0.0221 14 7 11.8229 3.8686 -0.0265 15 14 9.5723 5.4843 -0.0223 16 1 9.3292 5.9156 1.3777 17 1 10.3715 6.5184 -0.7272 18 1 8.2726 5.3041 -0.7176 19 6 3.4867 -1.1489 -0.0059 20 7 2.1657 -1.1451 0.0005 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 1.6562 2.1369 -0.0004 25 1 5.8531 2.0666 -0.0028 26 1 8.1707 0.7165 0.8819 27 1 8.1647 0.7131 -0.8980 28 1 7.9457 3.1834 -0.9013 29 1 7.9517 3.1862 0.8787 30 1 12.3072 4.7091 -0.0303 31 1 4.0251 -2.0852 -0.0107 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230074771.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:17 Heat of formation + Delta-G solvation = -25.419820 kcal Electronic energy + Delta-G solvation = -15411.748038 eV Core-core repulsion = 12691.933018 eV Total energy + Delta-G solvation = -2719.815020 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.39248 -40.44828 -36.78341 -35.79431 -34.76932 -33.89260 -32.10963 -29.55244 -26.96203 -25.66132 -24.54535 -22.72336 -21.98848 -19.40739 -18.97386 -18.66947 -17.02912 -16.88083 -16.71757 -16.20652 -15.99897 -15.92289 -14.94925 -14.94574 -14.57262 -13.75561 -13.66287 -13.38845 -13.22412 -13.06542 -12.79033 -12.29992 -12.28016 -12.19791 -11.77850 -11.60502 -11.41305 -10.79663 -10.40728 -10.24372 -10.08750 -8.30820 -6.38149 -0.74714 -0.06344 1.38970 1.41189 1.52717 1.56063 1.95386 2.36376 2.63149 2.88319 3.00386 3.04158 3.29370 3.72404 3.92177 4.06709 4.31076 4.38551 4.45497 4.71738 4.78912 4.85586 5.03381 5.06317 5.33093 5.36003 5.37029 5.59707 6.00007 6.20335 6.36648 6.60676 6.69430 7.01978 7.26531 8.85800 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.044705 B = 0.004662 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.175712 B = 6004.686986 C = 6605.103740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.107 3.893 3 C 0.058 3.942 4 N -0.424 5.424 5 C 0.002 3.998 6 C 0.567 3.433 7 O -0.569 6.569 8 N -0.696 5.696 9 C 0.142 3.858 10 C -0.013 4.013 11 C -0.539 4.539 12 H 0.032 0.968 13 C 0.006 3.994 14 N -0.949 5.949 15 Si 0.957 3.043 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.240 1.240 19 C 0.111 3.889 20 N -0.460 5.460 21 H 0.103 0.897 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.220 0.780 25 H 0.417 0.583 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.268 0.732 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.297 -2.462 -0.002 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.036 4.036 3 C -0.107 4.107 4 N -0.141 5.141 5 C -0.136 4.136 6 C 0.352 3.648 7 O -0.449 6.449 8 N -0.346 5.346 9 C 0.018 3.982 10 C -0.051 4.051 11 C -0.577 4.577 12 H 0.051 0.949 13 C -0.191 4.191 14 N -0.589 5.589 15 Si 0.779 3.221 16 H -0.189 1.189 17 H -0.211 1.211 18 H -0.163 1.163 19 C -0.048 4.048 20 N -0.176 5.176 21 H 0.121 0.879 22 H 0.101 0.899 23 H 0.133 0.867 24 H 0.236 0.764 25 H 0.254 0.746 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -26.594 -3.124 0.000 26.777 hybrid contribution 0.588 0.746 0.011 0.950 sum -26.007 -2.378 0.011 26.115 Atomic orbital electron populations 1.20953 0.83935 1.05811 1.05219 1.23464 1.00834 0.89045 0.90259 1.24464 0.89068 1.01301 0.95844 1.68308 1.10860 1.28143 1.06748 1.21787 0.94382 0.92069 1.05349 1.18054 0.86136 0.83978 0.76660 1.90767 1.69544 1.32330 1.52231 1.45967 1.07795 1.08937 1.71925 1.21197 0.77375 0.98866 1.00719 1.19655 0.94636 0.92744 0.98058 1.21227 0.91332 0.93542 1.51636 0.94928 1.26047 0.95684 1.03763 0.93651 1.70069 1.08533 1.28425 1.51889 0.85566 0.79625 0.77528 0.79362 1.18944 1.21060 1.16266 1.23795 0.90474 0.99024 0.91484 1.68566 1.07587 1.30412 1.11010 0.87853 0.89942 0.86746 0.76399 0.74605 0.92917 0.92914 0.94607 0.94733 0.92269 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.19 71.24 0.73 0.14 16 2 C 0.11 1.61 6.79 42.65 0.29 1.90 16 3 C 0.06 0.88 10.88 84.83 0.92 1.80 16 4 N -0.42 -9.91 9.71 -184.33 -1.79 -11.70 16 5 C 0.00 0.07 6.75 41.88 0.28 0.35 16 6 C 0.57 19.73 7.81 86.88 0.68 20.41 16 7 O -0.57 -23.28 16.35 -3.79 -0.06 -23.35 16 8 N -0.70 -24.23 5.55 -465.67 -2.58 -26.82 16 9 C 0.14 5.94 5.61 86.38 0.48 6.42 16 10 C -0.01 -0.60 4.16 29.85 0.12 -0.48 16 11 C -0.54 -31.01 9.66 25.60 0.25 -30.76 16 12 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 13 C 0.01 0.34 5.47 84.65 0.46 0.80 16 14 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 15 Si 0.96 42.77 27.47 68.60 1.88 44.65 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 19 C 0.11 2.78 10.77 84.93 0.91 3.69 16 20 N -0.46 -9.92 10.41 -182.22 -1.90 -11.82 16 21 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 22 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.11 0.02 8.08 -2.39 -0.02 0.00 16 24 H 0.22 1.25 8.06 -2.91 -0.02 1.22 16 25 H 0.42 12.67 7.82 -92.71 -0.73 11.95 16 26 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.04 1.55 7.20 -2.38 -0.02 1.53 16 29 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 30 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 31 H 0.18 4.41 7.65 -2.91 -0.02 4.39 16 Total: -1.00 -73.72 277.55 1.35 -72.37 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.37 Total: 11.46 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.13 Total: 4.28 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -5.97 Total: -109.41 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.06 Total: -23.35 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Total: -73.72 1.35 -72.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230074771.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.949 kcal (2) G-P(sol) polarization free energy of solvation -73.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds