Wall clock time and date at job start Sun Mar 29 2020 21:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46846 * 2 1 4 4 N 1.46497 * 109.47082 * 172.66253 * 3 2 1 5 5 C 1.36870 * 120.00137 * 76.06087 * 4 3 2 6 6 H 1.08003 * 120.00057 * 178.52013 * 5 4 3 7 7 C 1.39051 * 120.00294 * 358.52600 * 5 4 3 8 8 N 1.31368 * 119.99584 * 14.61988 * 7 5 4 9 9 Si 1.86799 * 120.00166 * 194.62706 * 7 5 4 10 10 H 1.48501 * 109.47172 * 89.99658 * 9 7 5 11 11 H 1.48505 * 109.47042 * 209.99526 * 9 7 5 12 12 H 1.48491 * 109.47033 * 329.99380 * 9 7 5 13 13 C 1.34778 * 119.99930 * 256.06078 * 4 3 2 14 14 O 1.21597 * 120.00084 * 182.93184 * 13 4 3 15 15 C 1.47715 * 120.00077 * 2.93350 * 13 4 3 16 16 C 1.40019 * 120.94718 * 217.71504 * 15 13 4 17 17 N 1.32132 * 118.91696 * 179.74967 * 16 15 13 18 18 C 1.31879 * 120.96818 * 0.25020 * 17 16 15 19 19 N 1.31872 * 122.11683 * 0.02562 * 18 17 16 20 20 C 1.32126 * 120.97538 * 359.97438 * 19 18 17 21 21 H 1.08996 * 109.47121 * 59.99863 * 1 2 3 22 22 H 1.08999 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47035 * 300.00003 * 1 2 3 24 24 H 1.08999 * 109.47035 * 239.99997 * 2 1 3 25 25 H 1.08997 * 109.47168 * 119.99352 * 2 1 3 26 26 H 1.08996 * 109.47345 * 52.65885 * 3 2 1 27 27 H 1.09006 * 109.47127 * 292.66240 * 3 2 1 28 28 H 0.97000 * 119.99442 * 180.02562 * 8 7 5 29 29 H 1.08003 * 120.54045 * 0.02562 * 16 15 13 30 30 H 1.08008 * 118.93820 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.54275 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4943 1.4464 0.1764 5 6 4.3115 1.1139 -0.8700 6 1 5.3842 1.1399 -0.7469 7 6 3.7607 0.7429 -2.0917 8 7 2.4929 0.9811 -2.3400 9 14 4.8235 -0.0945 -3.3796 10 1 4.7659 -1.5660 -3.1883 11 1 4.3218 0.2485 -4.7346 12 1 6.2275 0.3683 -3.2398 13 6 4.0276 1.7773 1.3691 14 8 5.2351 1.8323 1.5010 15 6 3.1451 2.0730 2.5162 16 6 3.4652 3.0858 3.4286 17 7 2.6446 3.3197 4.4374 18 6 1.5423 2.6127 4.5935 19 7 1.2053 1.6466 3.7615 20 6 1.9676 1.3449 2.7253 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.5734 1.9929 0.8170 27 1 1.7877 1.9171 -0.9484 28 1 2.1087 0.7219 -3.1921 29 1 4.3659 3.6693 3.3072 30 1 0.8948 2.8320 5.4296 31 1 1.6851 0.5521 2.0485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230873716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:22 Heat of formation + Delta-G solvation = 20.418773 kcal Electronic energy + Delta-G solvation = -16863.223517 eV Core-core repulsion = 14145.396208 eV Total energy + Delta-G solvation = -2717.827309 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.22140 -40.23357 -37.53403 -34.95434 -34.25387 -33.44490 -32.78203 -27.98745 -26.89282 -25.50810 -25.33426 -22.46408 -21.48767 -19.16785 -18.86834 -18.66254 -17.86595 -16.78326 -16.19386 -15.91591 -15.67319 -15.30448 -14.91424 -14.61496 -14.11421 -13.99661 -13.57276 -13.15207 -12.93564 -12.63146 -12.48180 -12.21358 -12.14478 -12.03111 -11.84241 -11.54805 -10.91390 -10.72319 -10.44584 -10.31845 -9.82212 -8.20717 -5.94934 -0.42323 -0.05655 1.36927 1.44427 1.54426 1.93203 2.21500 2.70861 2.88685 3.04913 3.14948 3.20774 3.50331 3.73222 4.01230 4.22682 4.40166 4.44847 4.53590 4.78493 4.79517 5.03023 5.19705 5.29732 5.31809 5.44403 5.62685 5.74577 5.79592 6.01579 6.47309 6.96269 7.06437 7.34151 7.88804 8.55557 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.032546 B = 0.008962 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.122921 B = 3123.582154 C = 3816.937966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.096 3.904 4 N -0.426 5.426 5 C -0.338 4.338 6 H 0.080 0.920 7 C 0.010 3.990 8 N -0.861 5.861 9 Si 0.990 3.010 10 H -0.270 1.270 11 H -0.268 1.268 12 H -0.278 1.278 13 C 0.458 3.542 14 O -0.635 6.635 15 C -0.218 4.218 16 C 0.183 3.817 17 N -0.526 5.526 18 C 0.291 3.709 19 N -0.524 5.524 20 C 0.158 3.842 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.125 0.875 28 H 0.278 0.722 29 H 0.175 0.825 30 H 0.240 0.760 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 -0.447 4.587 8.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C -0.027 4.027 4 N -0.140 5.140 5 C -0.466 4.466 6 H 0.098 0.902 7 C -0.193 4.193 8 N -0.500 5.500 9 Si 0.814 3.186 10 H -0.195 1.195 11 H -0.193 1.193 12 H -0.203 1.203 13 C 0.247 3.753 14 O -0.525 6.525 15 C -0.226 4.226 16 C 0.016 3.984 17 N -0.240 5.240 18 C 0.004 3.996 19 N -0.237 5.237 20 C -0.008 4.008 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.192 0.808 30 H 0.256 0.744 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.465 -0.243 5.195 9.098 hybrid contribution 1.313 -0.474 -1.400 1.977 sum -6.152 -0.717 3.795 7.264 Atomic orbital electron populations 1.21600 0.93692 1.02049 1.01863 1.21826 0.96880 0.96422 1.00476 1.22540 0.78128 0.98439 1.03549 1.43996 1.07455 1.54276 1.08284 1.19766 0.91443 1.44434 0.90957 0.90175 1.25935 0.97654 0.96633 0.99083 1.69874 1.12637 1.42791 1.24665 0.84974 0.78006 0.78610 0.77048 1.19506 1.19266 1.20298 1.17944 0.87407 0.86303 0.83612 1.90572 1.16037 1.61278 1.84613 1.21801 0.99014 1.02041 0.99731 1.23400 0.96942 0.91353 0.86746 1.68537 1.05734 1.28775 1.20930 1.25954 0.91210 0.85736 0.96677 1.68543 1.32815 1.17981 1.04388 1.24314 0.87655 0.96075 0.92803 0.92527 0.91715 0.92411 0.91559 0.94415 0.93401 0.85752 0.91056 0.80820 0.74389 0.79807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.84 71.98 0.71 -3.27 16 2 C -0.12 -4.47 4.66 30.60 0.14 -4.33 16 3 C 0.10 4.09 4.17 86.38 0.36 4.45 16 4 N -0.43 -21.43 2.67 -638.94 -1.71 -23.14 16 5 C -0.34 -18.24 9.44 84.10 0.79 -17.45 16 6 H 0.08 4.70 7.20 -2.91 -0.02 4.68 16 7 C 0.01 0.50 4.73 84.96 0.40 0.91 16 8 N -0.86 -39.86 8.05 21.68 0.17 -39.68 16 9 Si 0.99 39.52 29.58 68.60 2.03 41.54 16 10 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 11 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 12 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.46 23.02 7.34 86.75 0.64 23.65 16 14 O -0.63 -36.46 16.51 -4.02 -0.07 -36.53 16 15 C -0.22 -8.88 5.18 -19.91 -0.10 -8.98 16 16 C 0.18 6.61 10.95 85.08 0.93 7.54 16 17 N -0.53 -16.51 10.42 -198.91 -2.07 -18.59 16 18 C 0.29 7.87 12.27 180.84 2.22 10.09 16 19 N -0.52 -16.26 10.42 -198.92 -2.07 -18.33 16 20 C 0.16 5.64 8.71 85.08 0.74 6.38 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 24 H 0.07 2.84 6.03 -2.39 -0.01 2.82 16 25 H 0.04 1.41 6.34 -2.39 -0.02 1.40 16 26 H 0.05 1.89 4.94 -2.39 -0.01 1.88 16 27 H 0.13 5.81 5.47 -2.40 -0.01 5.80 16 28 H 0.28 11.97 8.31 -92.71 -0.77 11.20 16 29 H 0.17 6.06 8.06 -2.91 -0.02 6.03 16 30 H 0.24 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.19 6.50 3.38 -2.91 -0.01 6.49 16 Total: -1.00 -60.84 258.37 4.28 -56.56 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 1.16 Total: 19.17 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 6.83 Total: 18.99 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -5.68 Total: -99.74 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.07 Total: -36.53 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -60.84 4.28 -56.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230873716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.980 kcal (2) G-P(sol) polarization free energy of solvation -60.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds