Wall clock time and date at job start Sun Mar 29 2020 22:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46928 * 2 1 4 4 C 1.50705 * 109.46592 * 119.99459 * 2 1 3 5 5 H 1.07999 * 119.99901 * 120.76101 * 4 2 1 6 6 C 1.37872 * 119.99934 * 300.75937 * 4 2 1 7 7 N 1.31518 * 119.99896 * 153.36484 * 6 4 2 8 8 Si 1.86802 * 120.00420 * 333.63838 * 6 4 2 9 9 H 1.48496 * 109.47444 * 179.72432 * 8 6 4 10 10 H 1.48502 * 109.47043 * 299.72650 * 8 6 4 11 11 H 1.48502 * 109.46684 * 59.72470 * 8 6 4 12 12 N 1.46493 * 109.47223 * 239.99426 * 2 1 3 13 13 C 1.46503 * 120.00004 * 300.00396 * 12 2 1 14 14 C 1.34780 * 120.00079 * 120.00331 * 12 2 1 15 15 O 1.21547 * 119.99850 * 4.41079 * 14 12 2 16 16 C 1.47833 * 119.99919 * 184.41215 * 14 12 2 17 17 C 1.39946 * 120.94013 * 23.74516 * 16 14 12 18 18 N 1.32152 * 118.91813 * 179.69693 * 17 16 14 19 19 C 1.31859 * 120.96973 * 0.61468 * 18 17 16 20 20 N 1.31869 * 122.09768 * 359.65926 * 19 18 17 21 21 C 1.32152 * 120.96499 * 0.02562 * 20 19 18 22 22 H 1.08994 * 109.46988 * 174.29296 * 1 2 3 23 23 H 1.08996 * 109.47606 * 294.30220 * 1 2 3 24 24 H 1.09003 * 109.46743 * 54.30371 * 1 2 3 25 25 H 0.97001 * 119.99614 * 355.26271 * 7 6 4 26 26 H 1.08995 * 109.47725 * 83.93941 * 13 12 2 27 27 H 1.09005 * 109.46779 * 203.94384 * 13 12 2 28 28 H 1.09003 * 109.46880 * 323.93329 * 13 12 2 29 29 H 1.08001 * 120.53900 * 359.97438 * 17 16 14 30 30 H 1.08008 * 118.95797 * 179.67997 * 19 18 17 31 31 H 1.08000 * 120.53424 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6633 -1.5812 1.1317 6 6 1.6863 -0.2484 2.4827 7 7 1.6468 -1.0784 3.5021 8 14 1.2660 1.5549 2.7298 9 1 0.9243 1.7928 4.1552 10 1 2.4343 2.3914 2.3546 11 1 0.1054 1.9141 1.8759 12 7 2.0184 -0.6907 -1.1960 13 6 1.6644 -2.0933 -1.4278 14 6 2.7934 -0.0358 -2.0833 15 8 3.1533 1.1020 -1.8522 16 6 3.2055 -0.7013 -3.3373 17 6 2.4581 -1.7574 -3.8707 18 7 2.8598 -2.3195 -4.9973 19 6 3.9524 -1.9069 -5.6095 20 7 4.6888 -0.9194 -5.1390 21 6 4.3575 -0.2968 -4.0214 22 1 -0.3633 -1.0225 -0.1022 23 1 -0.3634 0.4229 0.9365 24 1 -0.3633 0.5997 -0.8346 25 1 1.7937 -2.0268 3.3612 26 1 0.6854 -2.1472 -1.9039 27 1 2.4098 -2.5537 -2.0764 28 1 1.6350 -2.6227 -0.4754 29 1 1.5651 -2.1044 -3.3722 30 1 4.2536 -2.3930 -6.5258 31 1 4.9655 0.5113 -3.6425 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230879985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:45 Heat of formation + Delta-G solvation = 36.970117 kcal Electronic energy + Delta-G solvation = -16476.083858 eV Core-core repulsion = 13758.974269 eV Total energy + Delta-G solvation = -2717.109589 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.27435 -39.06660 -35.81852 -34.01617 -33.21795 -32.09742 -29.97545 -26.96104 -25.28654 -24.68467 -24.41741 -21.47343 -19.06542 -18.05348 -17.61285 -17.41616 -16.58472 -15.68914 -15.06426 -14.51349 -13.98987 -13.89362 -13.69389 -13.38738 -12.77814 -12.74835 -12.01616 -11.94646 -11.66292 -11.45173 -11.36822 -10.82957 -10.53802 -10.10693 -9.85188 -9.72685 -9.39397 -9.37374 -9.27169 -8.35969 -7.95214 -6.60903 -4.20376 0.46429 0.92316 3.07934 3.33138 3.44174 3.47465 3.60481 3.78882 3.97765 4.05458 4.41238 4.42864 4.66663 4.92338 5.06429 5.19510 5.37098 5.61997 5.67918 6.12250 6.17963 6.25570 6.33074 6.47828 6.72328 6.83708 7.04729 7.25520 7.73295 7.87208 8.10865 8.24173 8.53895 8.79089 9.43306 10.74378 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.044881 B = 0.006794 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.717609 B = 4120.152956 C = 4346.864553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.238 3.762 3 H 0.055 0.945 4 C -0.627 4.627 5 H 0.063 0.937 6 C 0.047 3.953 7 N -0.886 5.886 8 Si 1.028 2.972 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.273 1.273 12 N -0.575 5.575 13 C 0.067 3.933 14 C 0.553 3.447 15 O -0.540 6.540 16 C -0.227 4.227 17 C 0.160 3.840 18 N -0.525 5.525 19 C 0.300 3.700 20 N -0.525 5.525 21 C 0.200 3.800 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.027 0.973 25 H 0.271 0.729 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.191 0.809 30 H 0.198 0.802 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -2.323 -13.800 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.664 4.664 5 H 0.081 0.919 6 C -0.161 4.161 7 N -0.517 5.517 8 Si 0.855 3.145 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.077 4.077 14 C 0.339 3.661 15 O -0.419 6.419 16 C -0.235 4.235 17 C -0.005 4.005 18 N -0.239 5.239 19 C 0.013 3.987 20 N -0.239 5.239 21 C 0.034 3.966 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.046 0.954 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.207 0.793 30 H 0.215 0.785 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.116 -1.079 -13.321 13.365 hybrid contribution 0.187 -0.960 -0.394 1.054 sum 0.304 -2.039 -13.715 13.869 Atomic orbital electron populations 1.22501 0.98307 1.00460 1.00500 1.19222 0.90447 0.94626 0.82045 0.92695 1.22009 1.36896 1.16815 0.90715 0.91931 1.25613 0.93230 1.05211 0.92024 1.70879 1.41713 1.04995 1.34139 0.84323 0.77623 0.76192 0.76327 1.20858 1.20500 1.19934 1.47895 1.48227 1.11475 1.22863 1.22219 0.98600 0.83336 1.03506 1.17805 0.79703 0.86062 0.82554 1.90751 1.55738 1.18183 1.77251 1.22048 1.00363 1.00891 1.00160 1.24500 0.98325 0.88287 0.89406 1.68532 1.16193 1.30155 1.09040 1.25177 0.86153 0.89357 0.98019 1.68530 1.32636 1.09504 1.13197 1.23474 0.91335 0.94317 0.87513 0.93296 0.91499 0.95410 0.91934 0.92563 0.91691 0.89349 0.79294 0.78548 0.80402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.94 37.16 0.33 -2.98 16 2 C 0.24 5.54 2.24 -69.08 -0.15 5.38 16 3 H 0.06 1.40 5.81 -51.93 -0.30 1.10 16 4 C -0.63 -16.67 8.28 -34.44 -0.29 -16.95 16 5 H 0.06 1.78 7.51 -52.49 -0.39 1.39 16 6 C 0.05 1.30 5.13 -17.82 -0.09 1.21 16 7 N -0.89 -25.71 13.70 55.43 0.76 -24.95 16 8 Si 1.03 24.38 26.50 -169.99 -4.50 19.88 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -5.95 5.87 56.52 0.33 -5.62 16 12 N -0.58 -11.41 2.75 -176.38 -0.49 -11.90 16 13 C 0.07 1.04 7.66 59.85 0.46 1.49 16 14 C 0.55 10.81 7.53 -12.33 -0.09 10.72 16 15 O -0.54 -12.33 16.02 5.32 0.09 -12.25 16 16 C -0.23 -3.54 5.54 -104.69 -0.58 -4.12 16 17 C 0.16 2.15 8.83 -16.77 -0.15 2.00 16 18 N -0.53 -6.74 10.42 -14.24 -0.15 -6.88 16 19 C 0.30 3.50 12.27 -92.03 -1.13 2.38 16 20 N -0.53 -7.02 10.42 -14.24 -0.15 -7.17 16 21 C 0.20 2.90 10.88 -16.77 -0.18 2.71 16 22 H 0.05 0.94 7.46 -51.93 -0.39 0.55 16 23 H 0.07 1.45 4.83 -51.93 -0.25 1.20 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.27 7.77 8.73 -40.82 -0.36 7.41 16 26 H 0.06 0.72 7.21 -51.93 -0.37 0.34 16 27 H 0.06 0.88 4.97 -51.93 -0.26 0.62 16 28 H 0.09 1.53 6.97 -51.93 -0.36 1.17 16 29 H 0.19 2.21 4.48 -52.49 -0.23 1.97 16 30 H 0.20 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.18 2.42 7.92 -52.49 -0.42 2.00 16 LS Contribution 259.28 15.07 3.91 3.91 Total: -1.00 -31.24 259.28 -5.46 -36.70 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.05 Total: 0.82 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.87 Total: 1.84 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.02 Total: -50.90 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.50 Total: 19.88 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.24 -5.46 -36.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230879985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.669 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds