Wall clock time and date at job start Sun Mar 29 2020 22:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46928 * 2 1 4 4 C 1.50705 * 109.46592 * 119.99459 * 2 1 3 5 5 H 1.07999 * 119.99901 * 120.76101 * 4 2 1 6 6 C 1.37872 * 119.99934 * 300.75937 * 4 2 1 7 7 N 1.31518 * 119.99896 * 153.36484 * 6 4 2 8 8 Si 1.86802 * 120.00420 * 333.63838 * 6 4 2 9 9 H 1.48496 * 109.47444 * 179.72432 * 8 6 4 10 10 H 1.48502 * 109.47043 * 299.72650 * 8 6 4 11 11 H 1.48502 * 109.46684 * 59.72470 * 8 6 4 12 12 N 1.46493 * 109.47223 * 239.99426 * 2 1 3 13 13 C 1.46503 * 120.00004 * 300.00396 * 12 2 1 14 14 C 1.34780 * 120.00079 * 120.00331 * 12 2 1 15 15 O 1.21547 * 119.99850 * 4.41079 * 14 12 2 16 16 C 1.47833 * 119.99919 * 184.41215 * 14 12 2 17 17 C 1.39946 * 120.94013 * 23.74516 * 16 14 12 18 18 N 1.32152 * 118.91813 * 179.69693 * 17 16 14 19 19 C 1.31859 * 120.96973 * 0.61468 * 18 17 16 20 20 N 1.31869 * 122.09768 * 359.65926 * 19 18 17 21 21 C 1.32152 * 120.96499 * 0.02562 * 20 19 18 22 22 H 1.08994 * 109.46988 * 174.29296 * 1 2 3 23 23 H 1.08996 * 109.47606 * 294.30220 * 1 2 3 24 24 H 1.09003 * 109.46743 * 54.30371 * 1 2 3 25 25 H 0.97001 * 119.99614 * 355.26271 * 7 6 4 26 26 H 1.08995 * 109.47725 * 83.93941 * 13 12 2 27 27 H 1.09005 * 109.46779 * 203.94384 * 13 12 2 28 28 H 1.09003 * 109.46880 * 323.93329 * 13 12 2 29 29 H 1.08001 * 120.53900 * 359.97438 * 17 16 14 30 30 H 1.08008 * 118.95797 * 179.67997 * 19 18 17 31 31 H 1.08000 * 120.53424 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6633 -1.5812 1.1317 6 6 1.6863 -0.2484 2.4827 7 7 1.6468 -1.0784 3.5021 8 14 1.2660 1.5549 2.7298 9 1 0.9243 1.7928 4.1552 10 1 2.4343 2.3914 2.3546 11 1 0.1054 1.9141 1.8759 12 7 2.0184 -0.6907 -1.1960 13 6 1.6644 -2.0933 -1.4278 14 6 2.7934 -0.0358 -2.0833 15 8 3.1533 1.1020 -1.8522 16 6 3.2055 -0.7013 -3.3373 17 6 2.4581 -1.7574 -3.8707 18 7 2.8598 -2.3195 -4.9973 19 6 3.9524 -1.9069 -5.6095 20 7 4.6888 -0.9194 -5.1390 21 6 4.3575 -0.2968 -4.0214 22 1 -0.3633 -1.0225 -0.1022 23 1 -0.3634 0.4229 0.9365 24 1 -0.3633 0.5997 -0.8346 25 1 1.7937 -2.0268 3.3612 26 1 0.6854 -2.1472 -1.9039 27 1 2.4098 -2.5537 -2.0764 28 1 1.6350 -2.6227 -0.4754 29 1 1.5651 -2.1044 -3.3722 30 1 4.2536 -2.3930 -6.5258 31 1 4.9655 0.5113 -3.6425 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230879985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:44 Heat of formation + Delta-G solvation = 15.249845 kcal Electronic energy + Delta-G solvation = -16477.025720 eV Core-core repulsion = 13758.974269 eV Total energy + Delta-G solvation = -2718.051451 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.40280 -40.52648 -37.45314 -35.39328 -34.68449 -33.60253 -31.58390 -28.31308 -26.89100 -26.23239 -25.51010 -23.07491 -20.66994 -19.65522 -19.00176 -18.61434 -17.97014 -17.24240 -16.50026 -15.86349 -15.54365 -15.16782 -15.00498 -14.72856 -14.54934 -14.27465 -13.77606 -13.53546 -13.21538 -12.84990 -12.72620 -12.39598 -11.90719 -11.88944 -11.66789 -11.30432 -11.00409 -10.75355 -10.43798 -10.41724 -9.63719 -8.75581 -6.37195 -0.62939 -0.14341 1.44238 1.52385 1.68221 1.71434 2.05124 2.43720 2.66598 2.95206 3.00785 3.06629 3.32869 3.41259 3.79002 4.09228 4.31091 4.43712 4.52936 4.62335 4.69377 4.72598 4.85782 5.12121 5.17257 5.35699 5.58296 5.68868 5.80948 6.03356 6.50152 6.55384 6.85817 7.06424 7.33709 8.56396 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.044881 B = 0.006794 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.717609 B = 4120.152956 C = 4346.864553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.237 3.763 3 H 0.032 0.968 4 C -0.623 4.623 5 H 0.032 0.968 6 C 0.005 3.995 7 N -0.916 5.916 8 Si 1.062 2.938 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.239 1.239 12 N -0.584 5.584 13 C 0.065 3.935 14 C 0.552 3.448 15 O -0.584 6.584 16 C -0.246 4.246 17 C 0.174 3.826 18 N -0.528 5.528 19 C 0.310 3.690 20 N -0.533 5.533 21 C 0.201 3.799 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.260 0.740 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.208 0.792 30 H 0.240 0.760 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -2.685 -16.177 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.135 3.865 3 H 0.050 0.950 4 C -0.661 4.661 5 H 0.050 0.950 6 C -0.198 4.198 7 N -0.549 5.549 8 Si 0.884 3.116 9 H -0.208 1.208 10 H -0.208 1.208 11 H -0.163 1.163 12 N -0.313 5.313 13 C -0.077 4.077 14 C 0.340 3.660 15 O -0.466 6.466 16 C -0.254 4.254 17 C 0.008 3.992 18 N -0.242 5.242 19 C 0.024 3.976 20 N -0.246 5.246 21 C 0.034 3.966 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.224 0.776 30 H 0.256 0.744 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.747 -1.482 -15.737 15.824 hybrid contribution 0.558 -0.955 0.228 1.129 sum -0.189 -2.437 -15.509 15.700 Atomic orbital electron populations 1.22342 0.95887 1.01794 1.00950 1.18969 0.92187 0.93256 0.82137 0.94987 1.22142 1.35825 1.15649 0.92483 0.94979 1.26720 0.93078 1.07909 0.92068 1.70976 1.44360 1.04627 1.34966 0.83885 0.78635 0.72208 0.76870 1.20812 1.20840 1.16349 1.47899 1.48436 1.13008 1.21952 1.22448 1.01292 0.80801 1.03151 1.18302 0.78634 0.85644 0.83468 1.90716 1.57211 1.20148 1.78484 1.21679 1.01938 1.02597 0.99143 1.24714 0.98171 0.86964 0.89317 1.68680 1.16670 1.30074 1.08741 1.26071 0.84959 0.88061 0.98477 1.68645 1.33091 1.10197 1.12701 1.23538 0.91002 0.94286 0.87745 0.91962 0.92516 0.93018 0.93103 0.88850 0.89496 0.91611 0.77568 0.74438 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 8.94 71.99 0.64 -5.35 16 2 C 0.24 10.96 2.24 44.25 0.10 11.06 16 3 H 0.03 1.64 5.81 -2.39 -0.01 1.63 16 4 C -0.62 -33.74 8.28 25.60 0.21 -33.53 16 5 H 0.03 1.89 7.51 -2.91 -0.02 1.87 16 6 C 0.00 0.27 5.13 84.65 0.43 0.70 16 7 N -0.92 -54.36 13.70 21.45 0.29 -54.07 16 8 Si 1.06 49.20 26.50 68.60 1.82 51.01 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.24 -9.75 5.87 99.48 0.58 -9.16 16 12 N -0.58 -22.71 2.75 -830.21 -2.29 -24.99 16 13 C 0.06 1.90 7.66 127.77 0.98 2.87 16 14 C 0.55 21.30 7.53 86.78 0.65 21.96 16 15 O -0.58 -26.99 16.02 -3.86 -0.06 -27.05 16 16 C -0.25 -7.28 5.54 -19.91 -0.11 -7.39 16 17 C 0.17 4.14 8.83 85.06 0.75 4.89 16 18 N -0.53 -11.58 10.42 -198.98 -2.07 -13.66 16 19 C 0.31 6.08 12.27 180.84 2.22 8.30 16 20 N -0.53 -12.88 10.42 -198.98 -2.07 -14.95 16 21 C 0.20 5.55 10.88 85.06 0.93 6.47 16 22 H 0.06 2.26 7.46 -2.39 -0.02 2.24 16 23 H 0.06 2.34 4.83 -2.39 -0.01 2.33 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 25 H 0.26 15.46 8.73 -92.71 -0.81 14.65 16 26 H 0.09 2.04 7.21 -2.39 -0.02 2.03 16 27 H 0.09 2.14 4.97 -2.38 -0.01 2.13 16 28 H 0.07 2.24 6.97 -2.39 -0.02 2.23 16 29 H 0.21 4.04 4.48 -2.91 -0.01 4.03 16 30 H 0.24 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.18 4.79 7.92 -2.91 -0.02 4.76 16 Total: -1.00 -68.89 259.28 3.42 -65.47 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.00 Total: 8.24 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 6.81 Total: 10.00 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -6.14 Total: -107.68 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.82 Total: 51.01 kcal Total: -68.89 3.42 -65.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230879985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.722 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds