Wall clock time and date at job start Sun Mar 29 2020 21:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21550 * 120.00557 * 359.97438 * 14 13 3 16 16 C 1.47837 * 119.99857 * 180.02562 * 14 13 3 17 17 C 1.39958 * 120.93727 * 359.71886 * 16 14 13 18 18 N 1.32150 * 118.91966 * 179.70024 * 17 16 14 19 19 C 1.31865 * 120.96869 * 0.61205 * 18 17 16 20 20 N 1.31869 * 122.09617 * 359.65610 * 19 18 17 21 21 C 1.32153 * 120.96580 * 0.02562 * 20 19 18 22 22 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 23 23 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 25 25 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 26 26 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 27 27 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 28 28 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 29 29 H 1.07995 * 120.53614 * 359.97438 * 17 16 14 30 30 H 1.07996 * 118.95096 * 179.68570 * 19 18 17 31 31 H 1.08000 * 120.53494 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3370 2.6304 -0.4588 16 6 0.0689 3.3161 -2.6553 17 6 0.9594 3.3656 -3.7339 18 7 0.5767 3.9570 -4.8520 19 6 -0.6182 4.5051 -4.9550 20 7 -1.4858 4.4861 -3.9621 21 6 -1.1885 3.9105 -2.8103 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8787 0.5738 0.4634 28 1 2.2909 2.1165 -1.9977 29 1 1.9416 2.9237 -3.6553 30 1 -0.8953 4.9845 -5.8822 31 1 -1.9045 3.8986 -2.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231034690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:23 Heat of formation + Delta-G solvation = 5.458060 kcal Electronic energy + Delta-G solvation = -16315.398969 eV Core-core repulsion = 13596.922914 eV Total energy + Delta-G solvation = -2718.476054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19658 -39.08431 -35.45191 -33.97643 -32.86849 -32.25390 -31.08322 -27.42399 -25.15636 -24.56733 -22.44607 -21.10588 -19.78828 -18.37417 -17.73967 -17.57649 -16.61322 -15.55387 -15.21997 -14.54170 -14.17310 -13.80737 -13.65762 -13.32604 -12.71719 -12.54614 -12.40671 -11.79958 -11.67288 -11.02325 -10.87804 -10.79500 -10.54245 -10.00395 -9.80202 -9.72899 -9.49339 -9.43986 -9.18752 -8.39551 -8.25421 -6.66170 -4.29591 0.39733 0.88849 3.09609 3.36361 3.40911 3.54992 3.63262 3.82958 3.91156 4.03247 4.37882 4.38462 4.74598 5.06169 5.12053 5.20186 5.64633 5.98481 6.01920 6.13293 6.18702 6.59769 6.70206 6.71772 6.84016 6.94235 7.21623 7.27392 7.53531 7.82843 8.16190 8.27025 8.55925 8.77262 9.37769 10.72793 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.006751 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.128428 B = 4146.531704 C = 4493.365482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.248 3.752 4 H 0.047 0.953 5 C -0.626 4.626 6 H 0.063 0.937 7 C 0.046 3.954 8 N -0.891 5.891 9 Si 1.033 2.967 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.283 1.283 13 N -0.691 5.691 14 C 0.552 3.448 15 O -0.538 6.538 16 C -0.228 4.228 17 C 0.179 3.821 18 N -0.523 5.523 19 C 0.302 3.698 20 N -0.525 5.525 21 C 0.201 3.799 22 H 0.046 0.954 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.173 0.827 30 H 0.199 0.801 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 3.950 -8.989 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.145 3.855 4 H 0.065 0.935 5 C -0.663 4.663 6 H 0.081 0.919 7 C -0.162 4.162 8 N -0.523 5.523 9 Si 0.860 3.140 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.209 1.209 13 N -0.338 5.338 14 C 0.335 3.665 15 O -0.418 6.418 16 C -0.236 4.236 17 C 0.012 3.988 18 N -0.236 5.236 19 C 0.015 3.985 20 N -0.238 5.238 21 C 0.034 3.966 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.190 0.810 30 H 0.215 0.785 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.333 3.999 -7.551 13.408 hybrid contribution 0.611 -0.038 -1.340 1.474 sum -9.722 3.960 -8.891 13.757 Atomic orbital electron populations 1.21901 0.97343 0.99036 1.01954 1.22216 0.93768 0.99515 1.01336 1.19209 0.96026 0.88635 0.81631 0.93517 1.22020 0.89490 1.49868 1.04936 0.91909 1.25640 0.96839 0.91892 1.01807 1.70833 1.10483 1.39811 1.31127 0.84193 0.76391 0.77524 0.75917 1.20913 1.19270 1.20893 1.46251 1.13937 1.55140 1.18471 1.17760 0.83238 0.79388 0.86094 1.90761 1.50834 1.59988 1.40169 1.22148 0.98414 1.04906 0.98108 1.23560 0.98826 0.89594 0.86846 1.68451 1.18684 1.10691 1.25818 1.25180 0.84880 0.91084 0.97372 1.68540 1.35657 1.18349 1.01254 1.23509 0.93346 0.85639 0.94102 0.93465 0.94950 0.92777 0.93055 0.91913 0.91861 0.77458 0.81018 0.78469 0.80201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.53 37.16 0.32 -2.49 16 2 C -0.13 -2.76 5.03 -26.73 -0.13 -2.89 16 3 C 0.25 5.61 1.78 -69.08 -0.12 5.48 16 4 H 0.05 1.15 5.99 -51.93 -0.31 0.84 16 5 C -0.63 -16.13 8.97 -34.44 -0.31 -16.43 16 6 H 0.06 1.69 7.96 -52.49 -0.42 1.27 16 7 C 0.05 1.25 5.25 -17.82 -0.09 1.15 16 8 N -0.89 -25.70 13.70 55.43 0.76 -24.94 16 9 Si 1.03 24.17 26.33 -169.99 -4.48 19.69 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -5.92 5.88 56.52 0.33 -5.58 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.69 -12.97 4.98 -55.88 -0.28 -13.25 16 14 C 0.55 9.83 6.38 -12.33 -0.08 9.75 16 15 O -0.54 -11.00 13.58 5.32 0.07 -10.93 16 16 C -0.23 -3.30 5.91 -104.69 -0.62 -3.92 16 17 C 0.18 2.30 10.81 -16.77 -0.18 2.12 16 18 N -0.52 -6.57 10.42 -14.24 -0.15 -6.72 16 19 C 0.30 3.40 12.27 -92.03 -1.13 2.27 16 20 N -0.52 -6.65 10.42 -14.25 -0.15 -6.80 16 21 C 0.20 2.70 10.88 -16.78 -0.18 2.52 16 22 H 0.05 0.90 5.63 -51.93 -0.29 0.61 16 23 H 0.03 0.55 8.14 -51.94 -0.42 0.13 16 24 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.06 1.39 5.64 -51.93 -0.29 1.10 16 27 H 0.27 7.73 8.73 -40.82 -0.36 7.37 16 28 H 0.39 6.43 6.66 -40.82 -0.27 6.15 16 29 H 0.17 1.88 6.54 -52.49 -0.34 1.54 16 30 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.18 2.24 7.74 -52.49 -0.41 1.84 16 LS Contribution 262.45 15.07 3.96 3.96 Total: -1.00 -30.08 262.45 -6.03 -36.11 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.23 Total: 5.32 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.53 Total: -2.44 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.18 Total: -51.71 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.48 Total: 19.69 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.08 -6.03 -36.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231034690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.567 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds