Wall clock time and date at job start Sun Mar 29 2020 21:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21550 * 120.00557 * 359.97438 * 14 13 3 16 16 C 1.47837 * 119.99857 * 180.02562 * 14 13 3 17 17 C 1.39958 * 120.93727 * 359.71886 * 16 14 13 18 18 N 1.32150 * 118.91966 * 179.70024 * 17 16 14 19 19 C 1.31865 * 120.96869 * 0.61205 * 18 17 16 20 20 N 1.31869 * 122.09617 * 359.65610 * 19 18 17 21 21 C 1.32153 * 120.96580 * 0.02562 * 20 19 18 22 22 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 23 23 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 25 25 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 26 26 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 27 27 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 28 28 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 29 29 H 1.07995 * 120.53614 * 359.97438 * 17 16 14 30 30 H 1.07996 * 118.95096 * 179.68570 * 19 18 17 31 31 H 1.08000 * 120.53494 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3370 2.6304 -0.4588 16 6 0.0689 3.3161 -2.6553 17 6 0.9594 3.3656 -3.7339 18 7 0.5767 3.9570 -4.8520 19 6 -0.6182 4.5051 -4.9550 20 7 -1.4858 4.4861 -3.9621 21 6 -1.1885 3.9105 -2.8103 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8787 0.5738 0.4634 28 1 2.2909 2.1165 -1.9977 29 1 1.9416 2.9237 -3.6553 30 1 -0.8953 4.9845 -5.8822 31 1 -1.9045 3.8986 -2.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231034690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:23 Heat of formation + Delta-G solvation = -15.405718 kcal Electronic energy + Delta-G solvation = -16316.303690 eV Core-core repulsion = 13596.922914 eV Total energy + Delta-G solvation = -2719.380776 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.25540 -40.51964 -37.13858 -35.05551 -34.46521 -33.85986 -32.47448 -29.19984 -26.31620 -25.61317 -24.25293 -22.58256 -21.40675 -20.08208 -18.94087 -18.68221 -18.01710 -17.14633 -16.56092 -15.87167 -15.54687 -15.24447 -14.72162 -14.62000 -14.48551 -14.43628 -14.02894 -13.55682 -12.80498 -12.65941 -12.47271 -12.30069 -12.00838 -11.72551 -11.54264 -11.16395 -10.94162 -10.84935 -10.47617 -10.42647 -9.87669 -8.79425 -6.42383 -0.64223 -0.12037 1.49730 1.50532 1.71585 1.82856 2.23509 2.44534 2.73417 2.98559 3.00306 3.09103 3.35564 3.65224 3.87730 4.29226 4.33483 4.40308 4.54185 4.65265 4.86416 5.10206 5.17820 5.20407 5.28328 5.54772 5.57561 5.66472 5.71991 6.02907 6.53280 6.69790 6.87128 7.21315 7.33400 8.58925 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.006751 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.128428 B = 4146.531704 C = 4493.365482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.252 3.748 4 H 0.030 0.970 5 C -0.619 4.619 6 H 0.043 0.957 7 C 0.002 3.998 8 N -0.924 5.924 9 Si 1.066 2.934 10 H -0.277 1.277 11 H -0.250 1.250 12 H -0.281 1.281 13 N -0.693 5.693 14 C 0.557 3.443 15 O -0.566 6.566 16 C -0.244 4.244 17 C 0.187 3.813 18 N -0.532 5.532 19 C 0.311 3.689 20 N -0.532 5.532 21 C 0.205 3.795 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.261 0.739 28 H 0.402 0.598 29 H 0.187 0.813 30 H 0.238 0.762 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 4.359 -10.127 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.148 3.852 4 H 0.048 0.952 5 C -0.657 4.657 6 H 0.062 0.938 7 C -0.200 4.200 8 N -0.558 5.558 9 Si 0.888 3.112 10 H -0.203 1.203 11 H -0.173 1.173 12 H -0.207 1.207 13 N -0.342 5.342 14 C 0.343 3.657 15 O -0.447 6.447 16 C -0.252 4.252 17 C 0.020 3.980 18 N -0.246 5.246 19 C 0.025 3.975 20 N -0.246 5.246 21 C 0.038 3.962 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.238 0.762 29 H 0.204 0.796 30 H 0.254 0.746 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.927 4.426 -8.733 15.431 hybrid contribution 1.087 -0.081 -1.138 1.576 sum -10.840 4.344 -9.871 15.291 Atomic orbital electron populations 1.21780 0.95540 1.00452 1.01422 1.22129 0.95303 0.98193 1.01091 1.18896 0.93666 0.89733 0.82901 0.95240 1.22203 0.91313 1.48181 1.03976 0.93842 1.26707 0.96960 0.91600 1.04704 1.70930 1.11650 1.42565 1.30619 0.83763 0.76330 0.77798 0.73286 1.20251 1.17345 1.20701 1.46030 1.14928 1.55553 1.17644 1.18077 0.82229 0.78484 0.86887 1.90742 1.51474 1.60946 1.41535 1.21776 0.99556 1.06791 0.97048 1.23784 0.99033 0.88754 0.86410 1.68581 1.19376 1.11201 1.25394 1.26026 0.83968 0.89369 0.98109 1.68658 1.36024 1.18640 1.01238 1.23633 0.92963 0.84935 0.94642 0.93376 0.92523 0.93907 0.92616 0.92903 0.92977 0.76204 0.79650 0.74586 0.79748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 8.53 71.98 0.61 -4.34 16 2 C -0.13 -5.31 5.03 30.59 0.15 -5.15 16 3 C 0.25 11.27 1.78 44.25 0.08 11.35 16 4 H 0.03 1.44 5.99 -2.38 -0.01 1.43 16 5 C -0.62 -32.10 8.97 25.60 0.23 -31.87 16 6 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16 7 C 0.00 0.12 5.25 84.65 0.44 0.56 16 8 N -0.92 -54.21 13.70 21.45 0.29 -53.92 16 9 Si 1.07 48.62 26.33 68.60 1.81 50.43 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.25 -10.56 5.88 99.48 0.59 -9.97 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.69 -25.47 4.98 -448.98 -2.24 -27.71 16 14 C 0.56 19.28 6.38 86.78 0.55 19.83 16 15 O -0.57 -22.65 13.58 -3.87 -0.05 -22.70 16 16 C -0.24 -6.65 5.91 -19.91 -0.12 -6.77 16 17 C 0.19 4.42 10.81 85.06 0.92 5.34 16 18 N -0.53 -11.87 10.42 -198.98 -2.07 -13.94 16 19 C 0.31 5.97 12.27 180.84 2.22 8.19 16 20 N -0.53 -12.08 10.42 -198.99 -2.07 -14.15 16 21 C 0.20 5.14 10.88 85.06 0.93 6.06 16 22 H 0.05 1.75 5.63 -2.38 -0.01 1.73 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.04 1.66 7.88 -2.39 -0.02 1.64 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 2.27 5.64 -2.39 -0.01 2.26 16 27 H 0.26 15.31 8.73 -92.71 -0.81 14.50 16 28 H 0.40 12.87 6.66 -92.71 -0.62 12.25 16 29 H 0.19 3.71 6.54 -2.91 -0.02 3.69 16 30 H 0.24 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.19 4.35 7.74 -2.91 -0.02 4.33 16 Total: -1.00 -63.79 262.45 2.07 -61.72 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.39 Total: 17.07 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.02 Total: 3.21 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -6.09 Total: -109.73 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.81 Total: 50.43 kcal Total: -63.79 2.07 -61.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231034690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.319 kcal (2) G-P(sol) polarization free energy of solvation -63.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds