Wall clock time and date at job start Sun Mar 29 2020 21:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31915 * 119.04413 * 2 1 4 4 C 1.32171 * 121.03748 * 180.02562 * 3 2 1 5 5 C 1.38808 * 119.14534 * 359.97438 * 4 3 2 6 6 C 1.39498 * 118.26346 * 0.02562 * 5 4 3 7 7 C 1.48452 * 120.54695 * 180.02562 * 6 5 4 8 8 O 1.21473 * 120.00111 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99548 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72340 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47037 * 59.99882 * 16 14 12 18 18 H 1.48501 * 109.46667 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99829 * 16 14 12 20 20 N 1.31553 * 119.04025 * 180.27618 * 2 1 3 21 21 H 1.08996 * 109.47445 * 90.00212 * 1 2 3 22 22 H 1.09003 * 109.47069 * 210.00693 * 1 2 3 23 23 H 1.08999 * 109.47069 * 330.00027 * 1 2 3 24 24 H 1.07996 * 120.42698 * 180.02562 * 4 3 2 25 25 H 1.08001 * 120.86612 * 179.97438 * 5 4 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 28 28 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 29 29 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 30 30 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 31 31 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1992 -0.0005 5 6 4.1861 0.0111 -0.0005 6 6 3.4760 -1.1896 -0.0005 7 6 4.1925 -2.4898 0.0001 8 8 5.4070 -2.5141 0.0001 9 7 3.4953 -3.6433 0.0006 10 6 4.2023 -4.9264 -0.0050 11 6 3.1849 -6.0692 -0.0101 12 6 3.9122 -7.3891 -0.0152 13 1 4.9920 -7.4107 -0.0152 14 6 3.1990 -8.5691 -0.0199 15 7 1.8841 -8.5428 -0.0204 16 14 4.1005 -10.2052 -0.0269 17 1 4.9528 -10.3059 1.1849 18 1 3.1130 -11.3143 -0.0318 19 1 4.9521 -10.2960 -1.2401 20 7 2.1456 -1.1501 -0.0055 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5140 23 1 -0.3633 0.8900 0.5138 24 1 3.9825 2.1489 -0.0001 25 1 5.2661 0.0163 -0.0013 26 1 2.5255 -3.6239 0.0002 27 1 4.8278 -4.9928 -0.8953 28 1 4.8275 -5.0006 0.8847 29 1 2.5595 -6.0028 0.8800 30 1 2.5597 -5.9950 -0.9000 31 1 1.3824 -9.3730 -0.0233 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259589531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:31 Heat of formation + Delta-G solvation = -1.165806 kcal Electronic energy + Delta-G solvation = -15449.626388 eV Core-core repulsion = 12730.863102 eV Total energy + Delta-G solvation = -2718.763287 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.33238 -39.07106 -35.04779 -34.03736 -33.36002 -32.80381 -29.71819 -28.66436 -26.06104 -24.44649 -23.07711 -21.09750 -20.56331 -18.18392 -17.54086 -16.40947 -15.68498 -15.57210 -15.15279 -14.96257 -14.75577 -14.45361 -13.55437 -13.31964 -13.23149 -12.70251 -12.56848 -12.30577 -11.25255 -11.12929 -11.06569 -10.94420 -10.68376 -10.36385 -10.29566 -9.71087 -9.68065 -9.41998 -9.23658 -8.62098 -8.39431 -6.09584 -4.13061 0.40794 0.74008 2.85591 3.23248 3.30969 3.35031 3.38737 3.70934 3.72173 3.87795 4.39788 4.57647 4.79249 4.81749 5.23338 5.27100 5.27274 5.37141 5.62014 5.71835 6.14373 6.25376 6.27578 6.62128 6.68995 6.79095 7.49069 7.59560 7.74076 7.87685 7.93337 8.23684 8.43026 8.92375 9.51752 11.01907 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.043609 B = 0.004556 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.920009 B = 6143.648110 C = 6759.809948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.315 3.685 3 N -0.511 5.511 4 C 0.151 3.849 5 C -0.182 4.182 6 C 0.144 3.856 7 C 0.557 3.443 8 O -0.536 6.536 9 N -0.693 5.693 10 C 0.118 3.882 11 C 0.012 3.988 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.494 5.494 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.176 0.824 25 H 0.160 0.840 26 H 0.410 0.590 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 17.885 0.052 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.227 5.227 4 C -0.017 4.017 5 C -0.205 4.205 6 C -0.005 4.005 7 C 0.339 3.661 8 O -0.412 6.412 9 N -0.342 5.342 10 C -0.004 4.004 11 C -0.025 4.025 12 C -0.562 4.562 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.211 5.211 21 H 0.106 0.894 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.193 0.807 25 H 0.178 0.822 26 H 0.245 0.755 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.574 17.644 0.047 17.715 hybrid contribution 0.935 -0.883 -0.024 1.287 sum -0.638 16.761 0.024 16.774 Atomic orbital electron populations 1.20608 0.85181 1.04470 1.04165 1.23294 0.98376 0.82983 0.90589 1.68203 1.10459 1.30470 1.13527 1.23325 0.89460 0.98593 0.90282 1.22973 1.03923 0.93012 1.00557 1.21908 0.89748 0.95275 0.93532 1.17836 0.86684 0.83080 0.78492 1.90769 1.12676 1.86908 1.50892 1.46266 1.11494 1.05996 1.70423 1.21890 0.96686 0.80636 1.01167 1.19334 0.93942 0.91118 0.98115 1.20992 0.93208 0.90307 1.51731 0.92248 1.24991 0.94863 0.99414 0.94923 1.69947 1.05457 1.27663 1.50096 0.86564 0.79360 0.82786 0.78772 1.20101 1.21223 1.20108 1.68245 1.08884 1.31055 1.12922 0.89387 0.89155 0.89531 0.80725 0.82204 0.75462 0.92061 0.92046 0.95749 0.95755 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.31 36.00 0.37 -0.38 16 2 C 0.31 3.89 7.64 -157.30 -1.20 2.69 16 3 N -0.51 -6.01 10.32 -10.74 -0.11 -6.12 16 4 C 0.15 1.51 11.31 -17.19 -0.19 1.32 16 5 C -0.18 -2.18 9.72 -38.90 -0.38 -2.56 16 6 C 0.14 2.15 6.79 -82.64 -0.56 1.59 16 7 C 0.56 9.96 7.83 -12.05 -0.09 9.86 16 8 O -0.54 -10.80 16.43 5.39 0.09 -10.71 16 9 N -0.69 -12.84 5.55 -61.05 -0.34 -13.18 16 10 C 0.12 2.52 5.61 -4.04 -0.02 2.49 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 16 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 N -0.49 -7.09 9.60 -7.32 -0.07 -7.16 16 21 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 25 H 0.16 1.71 7.74 -52.49 -0.41 1.30 16 26 H 0.41 7.12 7.86 -40.82 -0.32 6.80 16 27 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 281.60 15.07 4.24 4.24 Total: -1.00 -31.79 281.60 -6.76 -38.55 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -3.65 Total: 1.48 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.63 Total: 1.97 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.22 Total: -51.81 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.79 -6.76 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259589531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.383 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds