Wall clock time and date at job start Sun Mar 29 2020 21:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31915 * 119.04413 * 2 1 4 4 C 1.32171 * 121.03748 * 180.02562 * 3 2 1 5 5 C 1.38808 * 119.14534 * 359.97438 * 4 3 2 6 6 C 1.39498 * 118.26346 * 0.02562 * 5 4 3 7 7 C 1.48452 * 120.54695 * 180.02562 * 6 5 4 8 8 O 1.21473 * 120.00111 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99548 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72340 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00513 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99651 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47037 * 59.99882 * 16 14 12 18 18 H 1.48501 * 109.46667 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47133 * 299.99829 * 16 14 12 20 20 N 1.31553 * 119.04025 * 180.27618 * 2 1 3 21 21 H 1.08996 * 109.47445 * 90.00212 * 1 2 3 22 22 H 1.09003 * 109.47069 * 210.00693 * 1 2 3 23 23 H 1.08999 * 109.47069 * 330.00027 * 1 2 3 24 24 H 1.07996 * 120.42698 * 180.02562 * 4 3 2 25 25 H 1.08001 * 120.86612 * 179.97438 * 5 4 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 28 28 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 29 29 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 30 30 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 31 31 H 0.96999 * 120.00239 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1992 -0.0005 5 6 4.1861 0.0111 -0.0005 6 6 3.4760 -1.1896 -0.0005 7 6 4.1925 -2.4898 0.0001 8 8 5.4070 -2.5141 0.0001 9 7 3.4953 -3.6433 0.0006 10 6 4.2023 -4.9264 -0.0050 11 6 3.1849 -6.0692 -0.0101 12 6 3.9122 -7.3891 -0.0152 13 1 4.9920 -7.4107 -0.0152 14 6 3.1990 -8.5691 -0.0199 15 7 1.8841 -8.5428 -0.0204 16 14 4.1005 -10.2052 -0.0269 17 1 4.9528 -10.3059 1.1849 18 1 3.1130 -11.3143 -0.0318 19 1 4.9521 -10.2960 -1.2401 20 7 2.1456 -1.1501 -0.0055 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5140 23 1 -0.3633 0.8900 0.5138 24 1 3.9825 2.1489 -0.0001 25 1 5.2661 0.0163 -0.0013 26 1 2.5255 -3.6239 0.0002 27 1 4.8278 -4.9928 -0.8953 28 1 4.8275 -5.0006 0.8847 29 1 2.5595 -6.0028 0.8800 30 1 2.5597 -5.9950 -0.9000 31 1 1.3824 -9.3730 -0.0233 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259589531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:30 Heat of formation + Delta-G solvation = -23.472010 kcal Electronic energy + Delta-G solvation = -15450.593658 eV Core-core repulsion = 12730.863102 eV Total energy + Delta-G solvation = -2719.730556 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.33145 -40.48843 -36.75728 -35.19132 -34.66245 -34.26342 -31.59764 -29.47579 -27.56936 -25.99356 -24.12069 -22.88595 -21.94649 -19.45664 -18.57429 -18.44603 -16.90303 -16.73512 -16.62067 -16.40420 -16.06651 -15.91010 -14.88626 -14.79102 -14.38571 -14.27938 -13.49659 -13.26373 -13.22789 -12.94113 -12.55907 -12.28900 -12.05799 -11.96491 -11.82997 -11.59152 -11.34134 -10.62538 -10.59715 -10.43236 -10.14856 -8.23929 -6.35340 -0.65309 -0.13640 1.42432 1.45044 1.52937 1.58557 1.90882 2.41622 2.68600 2.73540 3.01284 3.10808 3.52079 3.71098 3.98077 4.37315 4.39281 4.43537 4.52293 4.73158 4.79633 4.84102 5.00866 5.13432 5.33876 5.42402 5.53870 5.71878 5.77241 6.12934 6.37902 6.77035 6.86821 6.98294 7.34194 8.87926 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.043609 B = 0.004556 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.920009 B = 6143.648110 C = 6759.809948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.305 3.695 3 N -0.515 5.515 4 C 0.166 3.834 5 C -0.177 4.177 6 C 0.117 3.883 7 C 0.559 3.441 8 O -0.562 6.562 9 N -0.695 5.695 10 C 0.137 3.863 11 C 0.022 3.978 12 C -0.548 4.548 13 H 0.063 0.937 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.967 3.033 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.268 1.268 20 N -0.515 5.515 21 H 0.100 0.900 22 H 0.089 0.911 23 H 0.103 0.897 24 H 0.223 0.777 25 H 0.172 0.828 26 H 0.414 0.586 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 19.190 0.034 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 N -0.229 5.229 4 C -0.001 4.001 5 C -0.200 4.200 6 C -0.029 4.029 7 C 0.344 3.656 8 O -0.440 6.440 9 N -0.344 5.344 10 C 0.014 3.986 11 C -0.016 4.016 12 C -0.586 4.586 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.567 5.567 16 Si 0.791 3.209 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.193 1.193 20 N -0.233 5.233 21 H 0.118 0.882 22 H 0.108 0.892 23 H 0.122 0.878 24 H 0.239 0.761 25 H 0.190 0.810 26 H 0.251 0.749 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.184 18.962 0.030 18.999 hybrid contribution 0.780 -1.163 -0.019 1.401 sum -0.404 17.799 0.011 17.804 Atomic orbital electron populations 1.20732 0.83076 1.05290 1.05158 1.23916 0.99736 0.82613 0.89942 1.68338 1.11292 1.29932 1.13388 1.24086 0.88860 0.99578 0.87625 1.23195 1.04596 0.92544 0.99631 1.21527 0.90435 0.94443 0.96501 1.18241 0.86485 0.83812 0.77095 1.90739 1.13835 1.87532 1.51934 1.46099 1.11661 1.05513 1.71138 1.21424 0.95498 0.80991 1.00681 1.19140 0.94081 0.91982 0.96350 1.21425 0.93695 0.91675 1.51843 0.91909 1.25896 0.95656 1.03306 0.94298 1.70063 1.06985 1.28794 1.50813 0.85469 0.78218 0.77994 0.79186 1.19233 1.20660 1.19252 1.68192 1.08728 1.32402 1.14020 0.88185 0.89197 0.87814 0.76062 0.81017 0.74896 0.92532 0.92510 0.97443 0.97454 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.31 71.24 0.73 -0.61 16 2 C 0.30 7.07 7.64 138.79 1.06 8.13 16 3 N -0.51 -10.71 10.32 -187.88 -1.94 -12.65 16 4 C 0.17 2.79 11.31 84.78 0.96 3.75 16 5 C -0.18 -3.89 9.72 22.71 0.22 -3.67 16 6 C 0.12 3.45 6.79 41.98 0.29 3.74 16 7 C 0.56 20.18 7.83 86.97 0.68 20.86 16 8 O -0.56 -22.77 16.43 -3.63 -0.06 -22.83 16 9 N -0.69 -26.37 5.55 -465.38 -2.58 -28.96 16 10 C 0.14 5.99 5.61 86.38 0.48 6.47 16 11 C 0.02 1.13 5.09 29.85 0.15 1.28 16 12 C -0.55 -30.69 9.11 25.60 0.23 -30.46 16 13 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 14 C 0.01 0.41 5.46 84.65 0.46 0.87 16 15 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 16 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 N -0.52 -14.53 9.60 -177.08 -1.70 -16.23 16 21 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 22 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 25 H 0.17 3.31 7.74 -2.91 -0.02 3.29 16 26 H 0.41 14.89 7.86 -92.71 -0.73 14.16 16 27 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -68.38 281.60 1.72 -66.66 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.42 Total: 12.60 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 5.27 Total: 10.37 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -5.94 Total: -112.38 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.38 1.72 -66.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259589531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.190 kcal (2) G-P(sol) polarization free energy of solvation -68.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds