Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46887 * 2 1 4 4 C 1.50697 * 109.47543 * 239.99684 * 2 1 3 5 5 H 1.07994 * 120.00101 * 239.99956 * 4 2 1 6 6 C 1.37876 * 119.99646 * 59.99903 * 4 2 1 7 7 N 1.31515 * 120.00131 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99857 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46927 * 60.00253 * 8 6 4 10 10 H 1.48497 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47091 * 300.00290 * 8 6 4 12 12 N 1.46500 * 109.47019 * 119.99369 * 2 1 3 13 13 C 1.46507 * 119.99944 * 60.00422 * 12 2 1 14 14 C 1.34780 * 120.00601 * 239.99987 * 12 2 1 15 15 O 1.21480 * 119.99491 * 2.29683 * 14 12 2 16 16 C 1.48448 * 120.00453 * 182.29483 * 14 12 2 17 17 C 1.39533 * 120.54989 * 172.92555 * 16 14 12 18 18 C 1.38765 * 118.26521 * 179.72800 * 17 16 14 19 19 N 1.32213 * 119.14170 * 0.24430 * 18 17 16 20 20 C 1.31872 * 121.04135 * 359.97438 * 19 18 17 21 21 N 1.31587 * 121.91740 * 0.02562 * 20 19 18 22 22 H 1.08997 * 109.47218 * 60.00203 * 1 2 3 23 23 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47490 * 300.00045 * 1 2 3 25 25 H 0.97001 * 119.99518 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46822 * 263.83454 * 13 12 2 27 27 H 1.08998 * 109.46858 * 23.83482 * 13 12 2 28 28 H 1.08999 * 109.46933 * 143.82976 * 13 12 2 29 29 H 1.08001 * 120.87133 * 359.97438 * 17 16 14 30 30 H 1.07995 * 120.42856 * 180.26779 * 18 17 16 31 31 H 1.08001 * 119.04549 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9427 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8259 -2.5204 -4.0076 10 1 1.8261 -0.4208 -5.2203 11 1 3.8064 -1.1210 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0835 15 8 3.0523 1.1390 1.9127 16 6 3.3299 -0.7492 3.2693 17 6 4.2495 -0.1277 4.1149 18 6 4.7159 -0.8366 5.2129 19 7 4.2807 -2.0683 5.4163 20 6 3.4143 -2.6278 4.5945 21 7 2.9450 -1.9938 3.5412 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7088 1.1611 -3.4844 26 1 0.8002 -2.1450 2.0905 27 1 1.4229 -2.5688 0.4777 28 1 2.5069 -2.6090 1.8889 29 1 4.5864 0.8801 3.9223 30 1 5.4250 -0.3878 5.8927 31 1 3.0807 -3.6360 4.7911 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259620612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = 33.165487 kcal Electronic energy + Delta-G solvation = -16411.321850 eV Core-core repulsion = 13694.047280 eV Total energy + Delta-G solvation = -2717.274570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.12148 -38.78742 -35.49620 -34.00892 -32.61420 -32.00715 -29.40059 -26.25755 -25.31325 -25.04083 -24.32750 -21.58650 -19.30895 -17.61621 -17.09618 -16.36830 -15.67162 -15.39045 -15.21137 -14.95322 -14.30016 -13.99213 -13.71079 -12.99795 -12.51917 -12.29275 -11.66021 -11.58453 -11.09825 -10.92590 -10.82672 -10.71758 -10.58334 -10.27261 -10.19101 -9.76043 -9.70854 -9.19146 -8.78998 -8.45166 -7.63323 -6.09878 -4.18202 0.63119 0.90703 3.20224 3.27389 3.32210 3.34237 3.58287 3.97559 4.06708 4.13046 4.37007 4.71738 4.94927 5.02797 5.21415 5.50669 5.63970 6.14119 6.22382 6.32501 6.66945 6.75805 6.83741 6.85041 7.03068 7.36665 7.46598 7.68058 7.91660 7.99025 8.14365 8.43005 8.72412 8.91325 9.47911 10.95513 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.040219 B = 0.006476 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.019300 B = 4322.545665 C = 4440.045831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.254 3.746 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.561 5.561 13 C 0.080 3.920 14 C 0.546 3.454 15 O -0.542 6.542 16 C 0.146 3.854 17 C -0.175 4.175 18 C 0.144 3.856 19 N -0.518 5.518 20 C 0.281 3.719 21 N -0.485 5.485 22 H 0.095 0.905 23 H 0.032 0.968 24 H 0.011 0.989 25 H 0.265 0.735 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.172 0.828 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -5.625 12.067 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.155 3.845 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.289 5.289 13 C -0.064 4.064 14 C 0.330 3.670 15 O -0.420 6.420 16 C -0.002 4.002 17 C -0.198 4.198 18 C -0.023 4.023 19 N -0.232 5.232 20 C -0.006 4.006 21 N -0.202 5.202 22 H 0.113 0.887 23 H 0.051 0.949 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.177 0.823 30 H 0.190 0.810 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.450 -5.799 11.923 13.700 hybrid contribution 0.547 0.233 -0.988 1.153 sum 3.996 -5.566 10.935 12.905 Atomic orbital electron populations 1.22076 0.97745 0.99661 1.00890 1.19092 0.91249 0.94539 0.79651 0.91784 1.21256 1.32110 1.13141 0.90125 0.92154 1.24888 0.94873 0.94973 0.98963 1.69871 1.36135 1.22543 1.23961 0.86519 0.79216 0.79606 0.81842 1.20160 1.21111 1.20241 1.48260 1.45854 1.12577 1.22205 1.22152 1.01056 0.82032 1.01122 1.17832 0.80718 0.86304 0.82142 1.90747 1.60446 1.15186 1.75607 1.22180 0.92653 0.90195 0.95177 1.22996 0.97765 1.03417 0.95584 1.23277 0.95299 0.89495 0.94209 1.68310 1.12095 1.11997 1.30815 1.25136 0.89440 1.00339 0.85726 1.69049 1.25385 1.08050 1.17750 0.88665 0.94926 0.96944 0.92549 0.93789 0.91085 0.89218 0.82347 0.81044 0.78480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.25 6.57 2.63 -69.09 -0.18 6.39 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.32 7.95 -34.44 -0.27 -14.59 16 5 H 0.06 1.61 7.44 -52.49 -0.39 1.22 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.56 -12.47 2.75 -176.15 -0.48 -12.96 16 13 C 0.08 1.47 8.29 59.85 0.50 1.97 16 14 C 0.55 11.75 7.68 -12.05 -0.09 11.66 16 15 O -0.54 -13.20 15.78 5.38 0.08 -13.11 16 16 C 0.15 2.47 6.65 -82.64 -0.55 1.92 16 17 C -0.17 -2.40 9.72 -38.90 -0.38 -2.78 16 18 C 0.14 1.60 11.31 -17.19 -0.19 1.41 16 19 N -0.52 -6.33 10.42 -14.60 -0.15 -6.48 16 20 C 0.28 3.42 12.27 -92.26 -1.13 2.29 16 21 N -0.49 -7.29 6.23 -11.14 -0.07 -7.36 16 22 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 23 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.36 7.12 -51.93 -0.37 1.00 16 28 H 0.09 1.52 5.25 -51.95 -0.27 1.24 16 29 H 0.16 2.05 7.75 -52.49 -0.41 1.64 16 30 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.20 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 267.04 15.07 4.02 4.02 Total: -1.00 -31.13 267.04 -6.40 -37.53 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.34 Total: -0.04 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -2.07 Total: 6.76 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.08 Total: -51.14 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.13 -6.40 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.694 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds