Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46887 * 2 1 4 4 C 1.50697 * 109.47543 * 239.99684 * 2 1 3 5 5 H 1.07994 * 120.00101 * 239.99956 * 4 2 1 6 6 C 1.37876 * 119.99646 * 59.99903 * 4 2 1 7 7 N 1.31515 * 120.00131 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99857 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46927 * 60.00253 * 8 6 4 10 10 H 1.48497 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47091 * 300.00290 * 8 6 4 12 12 N 1.46500 * 109.47019 * 119.99369 * 2 1 3 13 13 C 1.46507 * 119.99944 * 60.00422 * 12 2 1 14 14 C 1.34780 * 120.00601 * 239.99987 * 12 2 1 15 15 O 1.21480 * 119.99491 * 2.29683 * 14 12 2 16 16 C 1.48448 * 120.00453 * 182.29483 * 14 12 2 17 17 C 1.39533 * 120.54989 * 172.92555 * 16 14 12 18 18 C 1.38765 * 118.26521 * 179.72800 * 17 16 14 19 19 N 1.32213 * 119.14170 * 0.24430 * 18 17 16 20 20 C 1.31872 * 121.04135 * 359.97438 * 19 18 17 21 21 N 1.31587 * 121.91740 * 0.02562 * 20 19 18 22 22 H 1.08997 * 109.47218 * 60.00203 * 1 2 3 23 23 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47490 * 300.00045 * 1 2 3 25 25 H 0.97001 * 119.99518 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46822 * 263.83454 * 13 12 2 27 27 H 1.08998 * 109.46858 * 23.83482 * 13 12 2 28 28 H 1.08999 * 109.46933 * 143.82976 * 13 12 2 29 29 H 1.08001 * 120.87133 * 359.97438 * 17 16 14 30 30 H 1.07995 * 120.42856 * 180.26779 * 18 17 16 31 31 H 1.08001 * 119.04549 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9427 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8259 -2.5204 -4.0076 10 1 1.8261 -0.4208 -5.2203 11 1 3.8064 -1.1210 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0835 15 8 3.0523 1.1390 1.9127 16 6 3.3299 -0.7492 3.2693 17 6 4.2495 -0.1277 4.1149 18 6 4.7159 -0.8366 5.2129 19 7 4.2807 -2.0683 5.4163 20 6 3.4143 -2.6278 4.5945 21 7 2.9450 -1.9938 3.5412 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7088 1.1611 -3.4844 26 1 0.8002 -2.1450 2.0905 27 1 1.4229 -2.5688 0.4777 28 1 2.5069 -2.6090 1.8889 29 1 4.5864 0.8801 3.9223 30 1 5.4250 -0.3878 5.8927 31 1 3.0807 -3.6360 4.7911 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259620612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = 13.462658 kcal Electronic energy + Delta-G solvation = -16412.176229 eV Core-core repulsion = 13694.047280 eV Total energy + Delta-G solvation = -2718.128949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.25668 -40.39457 -37.31838 -35.35663 -34.37066 -33.09038 -31.31139 -27.77717 -27.34823 -26.46169 -25.33600 -23.23379 -20.94311 -18.87744 -18.59190 -18.21766 -17.26619 -16.74781 -16.50373 -16.41168 -15.92428 -15.37549 -14.75650 -14.71063 -14.37734 -13.93580 -13.53578 -13.03637 -12.94246 -12.76906 -12.72339 -12.24110 -12.14543 -11.89381 -11.72430 -11.38572 -11.19973 -10.79265 -10.55669 -10.03335 -9.40365 -8.17304 -6.34292 -0.55600 -0.04955 1.41507 1.43664 1.51398 1.76101 2.06334 2.41754 2.80716 2.93004 3.10766 3.22642 3.50943 3.77085 4.05745 4.56229 4.58335 4.67288 4.74487 4.81567 4.88333 5.02616 5.12705 5.40882 5.42441 5.53205 5.62423 5.78339 5.97208 6.10951 6.64235 6.70580 6.92658 7.13436 7.37768 8.87353 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.040219 B = 0.006476 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.019300 B = 4322.545665 C = 4440.045831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.258 3.742 3 H 0.015 0.985 4 C -0.543 4.543 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.572 5.572 13 C 0.086 3.914 14 C 0.538 3.462 15 O -0.585 6.585 16 C 0.121 3.879 17 C -0.176 4.176 18 C 0.165 3.835 19 N -0.517 5.517 20 C 0.287 3.713 21 N -0.500 5.500 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.019 0.981 25 H 0.266 0.734 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.161 0.839 30 H 0.218 0.782 31 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -7.670 13.534 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.033 0.967 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.300 5.300 13 C -0.056 4.056 14 C 0.324 3.676 15 O -0.466 6.466 16 C -0.025 4.025 17 C -0.199 4.199 18 C -0.002 4.002 19 N -0.231 5.231 20 C 0.000 4.000 21 N -0.217 5.217 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.178 0.822 30 H 0.235 0.765 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.404 -7.884 13.409 16.166 hybrid contribution 0.294 0.874 -1.306 1.598 sum 4.697 -7.010 12.103 14.754 Atomic orbital electron populations 1.21867 0.96776 1.00196 1.00094 1.18718 0.91969 0.92425 0.81252 0.96692 1.21488 1.32363 1.13247 0.91007 0.92197 1.25735 0.94929 0.95619 1.01971 1.70008 1.36961 1.23738 1.24683 0.85474 0.78404 0.78960 0.77976 1.18766 1.20626 1.20228 1.48256 1.46376 1.13906 1.21489 1.22280 1.02471 0.79917 1.00940 1.18526 0.79817 0.86106 0.83145 1.90700 1.61724 1.17173 1.76978 1.21517 0.94874 0.91522 0.94608 1.23136 0.97115 1.03755 0.95864 1.23962 0.94419 0.88663 0.93147 1.68463 1.11873 1.12284 1.30514 1.25868 0.88514 1.01294 0.84361 1.68858 1.26194 1.07330 1.19345 0.90919 0.93535 0.96188 0.92438 0.92309 0.92162 0.87309 0.82169 0.76544 0.74775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.97 71.98 0.65 -5.86 16 2 C 0.26 13.84 2.63 44.24 0.12 13.96 16 3 H 0.02 0.95 6.90 -2.39 -0.02 0.93 16 4 C -0.54 -30.08 7.95 25.60 0.20 -29.88 16 5 H 0.06 3.24 7.44 -2.91 -0.02 3.22 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -52.86 11.32 21.45 0.24 -52.61 16 8 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 9 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.57 -26.04 2.75 -829.52 -2.28 -28.32 16 13 C 0.09 3.12 8.29 127.77 1.06 4.18 16 14 C 0.54 23.79 7.68 86.96 0.67 24.45 16 15 O -0.58 -29.95 15.78 -3.65 -0.06 -30.01 16 16 C 0.12 4.01 6.65 41.99 0.28 4.29 16 17 C -0.18 -4.54 9.72 22.71 0.22 -4.32 16 18 C 0.17 3.06 11.31 84.76 0.96 4.02 16 19 N -0.52 -10.56 10.42 -200.09 -2.09 -12.64 16 20 C 0.29 5.96 12.27 180.92 2.22 8.18 16 21 N -0.50 -13.98 6.23 -189.16 -1.18 -15.16 16 22 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 23 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 24 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 2.29 7.12 -2.39 -0.02 2.27 16 28 H 0.11 3.54 5.25 -2.42 -0.01 3.53 16 29 H 0.16 4.02 7.75 -2.91 -0.02 4.00 16 30 H 0.22 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.24 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -69.90 267.04 4.63 -65.27 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.14 Total: 7.83 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 6.82 Total: 20.43 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -5.30 Total: -108.74 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.06 Total: -30.01 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -69.90 4.63 -65.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.735 kcal (2) G-P(sol) polarization free energy of solvation -69.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds