Wall clock time and date at job start Sun Mar 29 2020 22:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47645 * 2 1 4 4 C 1.50700 * 109.47475 * 120.00333 * 2 1 3 5 5 H 1.07999 * 119.99976 * 119.99415 * 4 2 1 6 6 C 1.37871 * 119.99889 * 300.00628 * 4 2 1 7 7 N 1.31514 * 120.00211 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00018 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46930 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47149 * 119.99281 * 8 6 4 11 11 H 1.48501 * 109.46751 * 239.99187 * 8 6 4 12 12 N 1.46501 * 109.46932 * 240.00565 * 2 1 3 13 13 C 1.46508 * 119.99798 * 299.99886 * 12 2 1 14 14 C 1.34781 * 120.00343 * 120.00110 * 12 2 1 15 15 O 1.21472 * 119.99622 * 2.33920 * 14 12 2 16 16 C 1.48454 * 119.99888 * 182.33576 * 14 12 2 17 17 C 1.39541 * 120.54755 * 172.92902 * 16 14 12 18 18 C 1.38756 * 118.26270 * 179.97438 * 17 16 14 19 19 N 1.32200 * 119.14995 * 359.97438 * 18 17 16 20 20 C 1.31879 * 121.03682 * 0.02562 * 19 18 17 21 21 N 1.31590 * 121.91666 * 359.97438 * 20 19 18 22 22 H 1.09001 * 109.47513 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46940 * 299.99497 * 1 2 3 24 24 H 1.09004 * 109.47401 * 59.99148 * 1 2 3 25 25 H 0.96999 * 120.00256 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46601 * 263.84556 * 13 12 2 27 27 H 1.09000 * 109.47092 * 23.84810 * 13 12 2 28 28 H 1.08998 * 109.46766 * 143.85175 * 13 12 2 29 29 H 1.08001 * 120.86258 * 0.02562 * 17 16 14 30 30 H 1.08006 * 120.42040 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.04206 * 180.28087 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4826 7 7 0.9434 0.8299 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1456 -2.2878 3.6035 10 1 3.1467 -0.1877 4.8164 11 1 1.1661 -1.5869 4.8159 12 7 2.0182 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1217 1.1143 -1.8701 16 6 3.2450 -0.7193 -3.3212 17 6 3.9220 -0.0119 -4.3154 18 6 4.3233 -0.6983 -5.4526 19 7 4.0536 -1.9884 -5.5549 20 6 3.4116 -2.6269 -4.5961 21 7 3.0121 -2.0171 -3.5006 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 0.7093 1.1614 3.4844 26 1 2.4686 -2.7350 -1.0686 27 1 0.7444 -2.3290 -0.8931 28 1 1.5166 -2.2589 -2.4953 29 1 4.1289 1.0420 -4.2023 30 1 4.8494 -0.1850 -6.2441 31 1 3.2121 -3.6821 -4.7112 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259620617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:35 Heat of formation + Delta-G solvation = 33.971781 kcal Electronic energy + Delta-G solvation = -16409.170029 eV Core-core repulsion = 13691.930423 eV Total energy + Delta-G solvation = -2717.239607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.12669 -38.79140 -35.50480 -34.01275 -32.61202 -32.01022 -29.40181 -26.27264 -25.34707 -25.02040 -24.33158 -21.58550 -19.29025 -17.62313 -17.09591 -16.39728 -15.63415 -15.39378 -15.20511 -14.99325 -14.29503 -13.99189 -13.71071 -12.98527 -12.60729 -12.31793 -11.71118 -11.53451 -11.09165 -10.91087 -10.77696 -10.75312 -10.57629 -10.27260 -10.19291 -9.74571 -9.69495 -9.17943 -8.79138 -8.45547 -7.63052 -6.09251 -4.17063 0.62677 0.90350 3.20094 3.25851 3.33754 3.37445 3.58010 3.97590 4.06491 4.12264 4.38263 4.71333 4.94379 5.02341 5.22357 5.50140 5.63246 6.10527 6.16685 6.40963 6.61785 6.75277 6.82032 6.83057 7.01353 7.37549 7.44542 7.68831 7.91907 7.98878 8.14489 8.43222 8.73454 8.92236 9.49229 10.96256 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.041806 B = 0.006448 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.594208 B = 4341.303064 C = 4494.931943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.253 3.747 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.561 5.561 13 C 0.083 3.917 14 C 0.546 3.454 15 O -0.541 6.541 16 C 0.146 3.854 17 C -0.175 4.175 18 C 0.144 3.856 19 N -0.518 5.518 20 C 0.281 3.719 21 N -0.485 5.485 22 H 0.033 0.967 23 H 0.096 0.904 24 H 0.012 0.988 25 H 0.263 0.737 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.172 0.828 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -5.279 -12.771 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.154 3.846 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.289 5.289 13 C -0.060 4.060 14 C 0.330 3.670 15 O -0.419 6.419 16 C -0.002 4.002 17 C -0.198 4.198 18 C -0.023 4.023 19 N -0.232 5.232 20 C -0.006 4.006 21 N -0.202 5.202 22 H 0.052 0.948 23 H 0.114 0.886 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.176 0.824 30 H 0.190 0.810 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.605 -5.517 -12.534 13.940 hybrid contribution 0.483 0.268 0.979 1.124 sum 3.088 -5.249 -11.555 13.062 Atomic orbital electron populations 1.22102 0.97799 0.99660 1.00967 1.19107 0.91158 0.94576 0.79796 0.91750 1.21331 1.31839 1.13014 0.90064 0.92075 1.24892 0.94919 0.94985 0.98995 1.69884 1.36422 1.22625 1.23727 0.86407 0.78616 0.79593 0.82602 1.19787 1.20888 1.20875 1.48259 1.46126 1.12490 1.22072 1.22120 1.00317 0.81438 1.02141 1.17826 0.80827 0.85951 0.82425 1.90747 1.57702 1.17004 1.76445 1.22184 0.92638 0.90027 0.95372 1.22994 0.98404 1.03805 0.94589 1.23273 0.93238 0.89918 0.95860 1.68310 1.13539 1.10192 1.31168 1.25140 0.89793 1.00924 0.84767 1.69041 1.18329 1.09717 1.23113 0.94830 0.88585 0.96913 0.92688 0.93266 0.91780 0.89388 0.82352 0.81047 0.78470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.96 37.15 0.33 -3.19 16 2 C 0.25 6.54 2.63 -69.08 -0.18 6.36 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.56 -12.47 2.75 -176.15 -0.48 -12.95 16 13 C 0.08 1.53 8.56 59.85 0.51 2.05 16 14 C 0.55 11.72 7.68 -12.05 -0.09 11.63 16 15 O -0.54 -13.18 15.78 5.39 0.09 -13.10 16 16 C 0.15 2.46 6.65 -82.64 -0.55 1.91 16 17 C -0.18 -2.39 9.72 -38.90 -0.38 -2.77 16 18 C 0.14 1.59 11.31 -17.20 -0.19 1.39 16 19 N -0.52 -6.30 10.42 -14.60 -0.15 -6.45 16 20 C 0.28 3.41 12.28 -92.26 -1.13 2.28 16 21 N -0.48 -7.28 6.24 -11.14 -0.07 -7.35 16 22 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 23 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 1.18 6.44 -51.93 -0.33 0.85 16 28 H 0.09 1.43 5.26 -51.94 -0.27 1.16 16 29 H 0.16 2.02 7.75 -52.49 -0.41 1.62 16 30 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.20 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 266.25 15.07 4.01 4.01 Total: -1.00 -31.38 266.25 -6.33 -37.71 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.26 Total: -0.28 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -2.07 Total: 6.72 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.08 Total: -51.20 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.38 -6.33 -37.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.679 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds