Wall clock time and date at job start Sun Mar 29 2020 21:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21513 * 119.99866 * 359.97438 * 14 13 3 16 16 C 1.48159 * 120.00089 * 180.02562 * 14 13 3 17 17 C 1.39716 * 120.18480 * 179.72626 * 16 14 13 18 18 C 1.38827 * 117.89682 * 179.73617 * 17 16 14 19 19 C 1.38562 * 118.06662 * 0.52577 * 18 17 16 20 20 N 1.32168 * 120.07510 * 359.72554 * 19 18 17 21 21 N 1.28356 * 122.29785 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 29 29 H 1.07998 * 121.05067 * 359.97438 * 17 16 14 30 30 H 1.08001 * 120.95830 * 180.23117 * 18 17 16 31 31 H 1.08007 * 119.96757 * 179.74761 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3407 2.6326 0.4323 16 6 0.0434 3.3272 2.6328 17 6 -1.2153 3.9212 2.7544 18 6 -1.5350 4.5241 3.9633 19 6 -0.5835 4.5100 4.9706 20 7 0.5864 3.9293 4.7684 21 7 0.8890 3.3652 3.6559 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8292 -0.0604 -2.9503 28 1 2.2720 2.1231 1.9978 29 1 -1.9189 3.9082 1.9351 30 1 -2.4955 4.9947 4.1126 31 1 -0.7983 4.9737 5.9221 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260133274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:03 Heat of formation + Delta-G solvation = 15.806342 kcal Electronic energy + Delta-G solvation = -16235.624862 eV Core-core repulsion = 13517.597543 eV Total energy + Delta-G solvation = -2718.027319 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04693 -38.82997 -35.19533 -33.28802 -32.83002 -32.14301 -30.75899 -27.16924 -25.19280 -24.52709 -22.99111 -20.96061 -19.46442 -18.22322 -17.28880 -16.81177 -15.89534 -15.39304 -15.19196 -14.53612 -14.20409 -14.14718 -13.39921 -13.10626 -12.69259 -12.11883 -11.56212 -11.45885 -11.24446 -10.99483 -10.82341 -10.37009 -10.33089 -10.22385 -10.00560 -9.81921 -9.65926 -9.32358 -9.05894 -8.50941 -7.90043 -6.12242 -4.21267 0.53469 0.71024 3.03251 3.26915 3.33515 3.36429 3.63980 3.91610 4.07863 4.35783 4.41197 4.60490 4.76115 4.96542 5.19421 5.29314 5.69009 5.83053 6.06335 6.36507 6.42535 6.61883 7.01773 7.14626 7.29593 7.36230 7.59811 7.71465 7.86855 8.15140 8.47451 8.64752 8.73591 8.99935 9.45497 10.93286 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035766 B = 0.006492 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.671422 B = 4311.757737 C = 4839.896894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.053 0.947 5 C -0.534 4.534 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.678 5.678 14 C 0.555 3.445 15 O -0.538 6.538 16 C 0.038 3.962 17 C -0.070 4.070 18 C -0.126 4.126 19 C 0.043 3.957 20 N -0.245 5.245 21 N -0.212 5.212 22 H 0.051 0.949 23 H 0.036 0.964 24 H 0.024 0.976 25 H 0.034 0.966 26 H 0.102 0.898 27 H 0.265 0.735 28 H 0.401 0.599 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 6.081 10.589 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.325 5.325 14 C 0.336 3.664 15 O -0.416 6.416 16 C -0.109 4.109 17 C -0.100 4.100 18 C -0.155 4.155 19 C -0.120 4.120 20 N -0.088 5.088 21 N -0.058 5.058 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.179 0.821 30 H 0.172 0.828 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.521 5.521 10.278 13.881 hybrid contribution -0.257 0.423 -0.208 0.536 sum -7.778 5.944 10.070 14.044 Atomic orbital electron populations 1.21852 0.98402 0.98228 1.01081 1.21950 0.92578 0.99575 1.02613 1.18940 0.94626 0.89332 0.80510 0.92953 1.21233 0.90483 1.39101 1.06419 0.91808 1.24876 0.98725 0.94712 0.95287 1.69892 1.35176 1.37652 1.09355 0.86426 0.84722 0.78558 0.77310 1.20484 1.21095 1.19785 1.46485 1.13812 1.53169 1.19006 1.17551 0.83824 0.79991 0.85024 1.90770 1.51777 1.60515 1.38516 1.23398 0.93040 0.97772 0.96666 1.22491 0.96469 0.92480 0.98554 1.22413 1.01369 0.98478 0.93288 1.24434 0.91101 0.95993 1.00478 1.73143 1.16744 1.05386 1.13479 1.73284 1.27355 1.09631 0.95574 0.93016 0.94540 0.95641 0.94765 0.87992 0.92539 0.76492 0.82067 0.82829 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.12 5.45 -26.74 -0.15 -3.27 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.60 11.30 55.43 0.63 -23.97 16 9 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.68 -14.78 5.01 -55.78 -0.28 -15.06 16 14 C 0.56 11.34 6.38 -12.19 -0.08 11.26 16 15 O -0.54 -12.08 13.53 5.35 0.07 -12.01 16 16 C 0.04 0.64 6.83 -82.83 -0.57 0.07 16 17 C -0.07 -0.91 9.73 -38.81 -0.38 -1.29 16 18 C -0.13 -1.18 10.20 -39.24 -0.40 -1.59 16 19 C 0.04 0.44 11.31 -17.29 -0.20 0.25 16 20 N -0.24 -3.59 11.51 30.58 0.35 -3.24 16 21 N -0.21 -3.59 10.75 33.32 0.36 -3.23 16 22 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 23 H 0.04 0.78 5.65 -51.93 -0.29 0.49 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.40 8.22 7.90 -40.82 -0.32 7.90 16 29 H 0.16 1.90 7.72 -52.49 -0.41 1.50 16 30 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 268.71 15.07 4.05 4.05 Total: -1.00 -30.41 268.71 -5.20 -35.61 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.36 Total: 5.64 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.00 Total: -3.53 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 1.06 Total: -45.50 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.41 -5.20 -35.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.419 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds