Wall clock time and date at job start Sun Mar 29 2020 21:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21476 * 119.99883 * 359.97438 * 14 13 3 16 16 C 1.48454 * 119.99955 * 180.02562 * 14 13 3 17 17 C 1.39541 * 120.54552 * 179.71548 * 16 14 13 18 18 C 1.38760 * 118.26096 * 179.79598 * 17 16 14 19 19 N 1.32206 * 119.14566 * 0.47757 * 18 17 16 20 20 C 1.31881 * 121.03927 * 359.74284 * 19 18 17 21 21 N 1.31579 * 121.91313 * 0.02562 * 20 19 18 22 22 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 26 26 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 29 29 H 1.07998 * 120.87025 * 359.97438 * 17 16 14 30 30 H 1.08001 * 120.42721 * 180.23377 * 18 17 16 31 31 H 1.07994 * 119.04098 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3405 2.6325 0.4327 16 6 0.0428 3.3285 2.6354 17 6 -1.2124 3.9242 2.7652 18 6 -1.5314 4.5280 3.9731 19 7 -0.6393 4.5270 4.9488 20 6 0.5403 3.9586 4.7912 21 7 0.8842 3.3706 3.6654 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8295 -0.0694 -2.9455 28 1 2.2720 2.1230 1.9978 29 1 -1.9182 3.9130 1.9479 30 1 -2.4945 4.9962 4.1131 31 1 1.2447 3.9771 5.6095 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260271603.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:06 Heat of formation + Delta-G solvation = 7.094729 kcal Electronic energy + Delta-G solvation = -16233.811995 eV Core-core repulsion = 13515.406912 eV Total energy + Delta-G solvation = -2718.405083 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.07113 -38.84419 -35.20038 -33.90574 -32.32431 -32.03958 -30.85654 -27.23727 -25.25337 -24.33686 -22.99853 -20.97074 -19.48222 -18.31721 -17.51818 -16.30576 -15.44006 -15.38878 -15.15209 -15.01880 -14.30568 -14.17912 -13.70354 -13.20468 -12.70944 -12.15984 -11.58583 -11.28141 -11.03063 -10.98373 -10.85984 -10.75508 -10.38620 -10.22971 -9.84496 -9.74266 -9.63413 -9.11064 -9.09717 -8.52694 -7.92278 -6.14572 -4.23988 0.60583 0.89603 3.19447 3.25878 3.30812 3.32296 3.62681 4.00957 4.04607 4.11820 4.33923 4.80142 4.97476 5.11989 5.17429 5.49262 5.73726 6.24239 6.34675 6.40457 6.59963 6.79029 6.99410 7.13136 7.27714 7.33995 7.57188 7.68349 7.83523 7.94236 8.12875 8.56313 8.70486 8.97732 9.42762 10.90832 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.006462 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.344246 B = 4332.144404 C = 4858.797069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.677 5.677 14 C 0.548 3.452 15 O -0.534 6.534 16 C 0.144 3.856 17 C -0.176 4.176 18 C 0.144 3.856 19 N -0.517 5.517 20 C 0.289 3.711 21 N -0.495 5.495 22 H 0.025 0.975 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.033 0.967 27 H 0.266 0.734 28 H 0.401 0.599 29 H 0.159 0.841 30 H 0.173 0.827 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 5.036 10.343 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.324 5.324 14 C 0.330 3.670 15 O -0.412 6.412 16 C -0.005 4.005 17 C -0.199 4.199 18 C -0.023 4.023 19 N -0.232 5.232 20 C 0.001 3.999 21 N -0.212 5.212 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.120 0.880 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.235 0.765 29 H 0.177 0.823 30 H 0.190 0.810 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.152 4.875 10.157 12.837 hybrid contribution 0.680 -0.018 -0.332 0.757 sum -5.473 4.857 9.825 12.250 Atomic orbital electron populations 1.21849 0.98373 0.98253 1.01087 1.21952 0.92591 0.99567 1.02597 1.18935 0.94596 0.89337 0.80541 0.92988 1.21184 0.90459 1.39141 1.06584 0.91928 1.24876 0.98729 0.94678 0.95296 1.69880 1.35285 1.37409 1.09428 0.86484 0.84676 0.78352 0.77463 1.20089 1.21114 1.20162 1.46467 1.13837 1.53116 1.18933 1.17778 0.83837 0.80154 0.85220 1.90767 1.51754 1.60222 1.38450 1.22230 0.90792 0.93406 0.94025 1.23017 0.98274 0.98116 1.00497 1.23286 0.98443 0.92635 0.87949 1.68332 1.03685 1.17912 1.33241 1.24972 0.91810 0.89047 0.94117 1.68423 1.35256 1.16763 1.00712 0.95619 0.94569 0.92993 0.87972 0.94817 0.92447 0.76517 0.82287 0.81015 0.78405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.69 2.24 -69.09 -0.16 6.53 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.41 11.28 55.43 0.63 -23.78 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.68 -14.46 5.01 -55.69 -0.28 -14.74 16 14 C 0.55 11.07 6.40 -12.05 -0.08 11.00 16 15 O -0.53 -12.00 13.56 5.39 0.07 -11.93 16 16 C 0.14 2.37 6.79 -82.64 -0.56 1.80 16 17 C -0.18 -2.35 9.72 -38.90 -0.38 -2.72 16 18 C 0.14 1.58 11.31 -17.20 -0.19 1.38 16 19 N -0.52 -6.32 10.42 -14.60 -0.15 -6.47 16 20 C 0.29 3.58 12.28 -92.26 -1.13 2.45 16 21 N -0.50 -7.52 9.70 -11.14 -0.11 -7.63 16 22 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 24 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 25 H 0.10 2.71 5.94 -51.93 -0.31 2.40 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.40 7.96 7.93 -40.82 -0.32 7.63 16 29 H 0.16 1.96 7.74 -52.49 -0.41 1.55 16 30 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -29.69 268.67 -6.90 -36.59 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -3.36 Total: 6.64 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.72 Total: 1.77 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.09 Total: -52.62 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.69 -6.90 -36.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260271603.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.684 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds