Wall clock time and date at job start Sun Mar 29 2020 22:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36909 * 119.99570 * 2 1 4 4 H 1.08003 * 119.99965 * 173.65543 * 3 2 1 5 5 C 1.39023 * 120.00038 * 353.65456 * 3 2 1 6 6 N 1.31375 * 120.00050 * 5.12049 * 5 3 2 7 7 Si 1.86800 * 120.00043 * 185.11299 * 5 3 2 8 8 H 1.48503 * 109.46773 * 60.00001 * 7 5 3 9 9 H 1.48496 * 109.47331 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47143 * 300.00681 * 7 5 3 11 11 C 1.34773 * 120.00092 * 179.97438 * 2 1 3 12 12 O 1.21600 * 120.00230 * 5.60925 * 11 2 1 13 13 C 1.47605 * 119.99734 * 185.61519 * 11 2 1 14 14 N 1.31901 * 126.58390 * 354.30562 * 13 11 2 15 15 N 1.28453 * 110.05521 * 179.97438 * 14 13 11 16 16 H 0.96998 * 124.88058 * 180.02562 * 15 14 13 17 17 C 1.35272 * 110.24142 * 359.97438 * 15 14 13 18 18 C 1.35035 * 107.08899 * 0.02562 * 17 15 14 19 19 C 1.50942 * 110.53374 * 179.97438 * 18 17 15 20 20 C 1.54521 * 105.05594 * 343.17933 * 19 18 17 21 21 C 1.51234 * 142.75731 * 180.02562 * 17 15 14 22 22 H 1.09005 * 109.46992 * 184.65878 * 1 2 3 23 23 H 1.08991 * 109.47656 * 304.65933 * 1 2 3 24 24 H 1.08998 * 109.47401 * 64.66768 * 1 2 3 25 25 H 0.97002 * 120.00129 * 179.97438 * 6 5 3 26 26 H 1.08996 * 110.33953 * 102.10077 * 19 18 17 27 27 H 1.08999 * 110.34159 * 224.25674 * 19 18 17 28 28 H 1.09003 * 110.92943 * 143.69691 * 20 19 18 29 29 H 1.08997 * 110.93024 * 267.36304 * 20 19 18 30 30 H 1.09001 * 110.32608 * 315.70363 * 21 17 15 31 31 H 1.08997 * 110.32737 * 77.81334 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.2245 1.1887 0.1034 5 6 1.4607 2.3860 -0.1331 6 7 0.1472 2.3903 -0.1576 7 14 2.4028 3.9926 -0.2767 8 1 3.2791 3.9470 -1.4748 9 1 1.4438 5.1187 -0.4080 10 1 3.2346 4.1889 0.9377 11 6 2.1389 -1.1672 0.0005 12 8 1.5353 -2.2178 -0.1019 13 6 3.6096 -1.1701 0.1256 14 7 4.3996 -0.1139 0.1387 15 7 5.6243 -0.4812 0.2621 16 1 6.3835 0.1215 0.2962 17 6 5.7030 -1.8295 0.3386 18 6 4.4422 -2.3060 0.2554 19 6 4.4398 -3.8134 0.3326 20 6 5.8990 -4.2324 0.0449 21 6 6.6834 -2.9720 0.4818 22 1 -0.3633 -1.0243 0.0835 23 1 -0.3634 0.5844 0.8452 24 1 -0.3634 0.4397 -0.9288 25 1 -0.3335 3.2278 -0.2501 26 1 4.1407 -4.1413 1.3281 27 1 3.7705 -4.2302 -0.4200 28 1 6.1816 -5.0968 0.6459 29 1 6.0443 -4.4336 -1.0165 30 1 7.5432 -2.8171 -0.1700 31 1 7.0070 -3.0657 1.5184 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263670372.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:22 Heat of formation + Delta-G solvation = 72.975754 kcal Electronic energy + Delta-G solvation = -16640.780579 eV Core-core repulsion = 13925.232312 eV Total energy + Delta-G solvation = -2715.548267 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.15564 -38.00430 -36.41543 -34.64404 -31.49071 -31.02057 -28.29016 -27.40550 -26.24684 -24.70081 -22.10540 -21.26026 -19.40240 -18.86294 -17.48107 -16.55364 -15.79293 -15.41570 -14.38547 -14.26189 -14.01301 -13.52478 -13.03844 -12.76804 -12.57501 -12.42399 -11.49568 -11.45935 -11.33491 -11.06220 -10.93337 -10.91025 -10.83327 -10.43023 -10.38822 -9.19820 -8.97108 -8.54034 -8.48202 -8.06820 -7.82764 -6.21494 -3.71560 2.42012 2.76442 3.21647 3.23433 3.25254 3.26834 4.13988 4.53329 4.58314 4.85843 4.95669 5.11383 5.29902 5.39307 5.54591 5.70058 5.86619 5.93454 6.03861 6.33700 6.43124 6.45478 6.64929 6.91410 7.15907 7.32887 7.50551 7.53704 7.77723 7.91369 8.56339 8.77404 9.18514 9.65520 10.02203 10.72069 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033194 B = 0.008482 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.321744 B = 3300.273137 C = 4101.732438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.421 5.421 3 C -0.325 4.325 4 H 0.147 0.853 5 C 0.025 3.975 6 N -0.878 5.878 7 Si 0.932 3.068 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.274 1.274 11 C 0.506 3.494 12 O -0.611 6.611 13 C 0.055 3.945 14 N -0.243 5.243 15 N -0.389 5.389 16 H 0.433 0.567 17 C -0.042 4.042 18 C -0.174 4.174 19 C -0.042 4.042 20 C -0.115 4.115 21 C -0.031 4.031 22 H 0.036 0.964 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.266 0.734 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.893 -5.821 1.258 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.137 5.137 3 C -0.455 4.455 4 H 0.164 0.836 5 C -0.178 4.178 6 N -0.518 5.518 7 Si 0.758 3.242 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.199 1.199 11 C 0.294 3.706 12 O -0.498 6.498 13 C -0.105 4.105 14 N -0.076 5.076 15 N -0.098 5.098 16 H 0.276 0.724 17 C -0.168 4.168 18 C -0.184 4.184 19 C -0.081 4.081 20 C -0.153 4.153 21 C -0.070 4.070 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.348 -5.000 1.129 12.452 hybrid contribution 0.753 0.790 0.011 1.092 sum 12.102 -4.210 1.140 12.864 Atomic orbital electron populations 1.21644 0.79300 0.97701 1.03536 1.43749 1.06474 1.05051 1.58407 1.21214 0.95518 0.82367 1.46409 0.83631 1.25445 0.95660 0.99952 0.96723 1.70237 1.06089 1.27275 1.48229 0.85918 0.78859 0.80401 0.78993 1.19874 1.20978 1.19902 1.16621 0.83752 0.84040 0.86190 1.90593 1.68022 1.31462 1.59763 1.21620 0.94996 0.87930 1.05945 1.74097 0.88344 1.24420 1.20752 1.42993 1.07454 1.04235 1.55149 0.72450 1.22048 0.99198 0.85962 1.09607 1.20765 0.91955 0.96192 1.09516 1.20282 0.95868 0.89654 1.02259 1.22469 0.94999 0.96225 1.01650 1.20551 0.95306 0.89455 1.01715 0.94550 0.91129 0.91743 0.92323 0.90930 0.90532 0.90381 0.90875 0.91189 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.22 8.85 59.85 0.53 3.75 16 2 N -0.42 -11.82 3.02 -123.36 -0.37 -12.20 16 3 C -0.33 -8.97 9.35 -14.99 -0.14 -9.11 16 4 H 0.15 3.88 4.12 -67.46 -0.28 3.60 16 5 C 0.03 0.68 5.46 -17.46 -0.10 0.58 16 6 N -0.88 -23.81 9.44 55.50 0.52 -23.29 16 7 Si 0.93 20.71 29.56 -169.99 -5.02 15.68 16 8 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 C 0.51 13.92 7.63 -12.44 -0.09 13.82 16 12 O -0.61 -17.61 16.29 5.28 0.09 -17.52 16 13 C 0.06 1.34 6.87 -82.80 -0.57 0.77 16 14 N -0.24 -5.37 8.67 33.40 0.29 -5.08 16 15 N -0.39 -6.57 6.84 33.61 0.23 -6.34 16 16 H 0.43 5.38 8.96 -190.45 -1.71 3.67 16 17 C -0.04 -0.68 8.12 -81.95 -0.67 -1.34 16 18 C -0.17 -3.46 6.83 -104.43 -0.71 -4.17 16 19 C -0.04 -0.68 6.77 -26.97 -0.18 -0.86 16 20 C -0.12 -1.29 7.15 -25.01 -0.18 -1.47 16 21 C -0.03 -0.35 6.79 -26.70 -0.18 -0.53 16 22 H 0.04 0.93 6.94 -51.93 -0.36 0.57 16 23 H 0.07 1.90 6.99 -51.93 -0.36 1.54 16 24 H 0.06 1.75 7.11 -51.93 -0.37 1.38 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 260.24 15.07 3.92 3.92 Total: -1.00 -33.04 260.24 -7.38 -40.43 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.75 Total: 2.96 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.29 Total: 1.43 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.67 Total: -46.91 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.09 Total: -17.52 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.04 -7.38 -40.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263670372.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.402 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds