Wall clock time and date at job start Sun Mar 29 2020 21:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34285 * 126.29269 * 2 1 4 4 H 0.96997 * 125.75690 * 0.02562 * 3 2 1 5 5 N 1.39934 * 108.49414 * 180.27212 * 3 2 1 6 6 C 1.30447 * 108.91713 * 359.75022 * 5 3 2 7 7 C 1.38107 * 126.30102 * 179.85779 * 2 1 3 8 8 C 1.47352 * 126.41799 * 359.97438 * 7 2 1 9 9 O 1.21626 * 120.00191 * 37.48486 * 8 7 2 10 10 N 1.34779 * 119.99762 * 217.47384 * 8 7 2 11 11 C 1.36987 * 120.00092 * 175.23687 * 10 8 7 12 12 H 1.07997 * 119.99860 * 327.00391 * 11 10 8 13 13 C 1.38976 * 120.00131 * 146.99889 * 11 10 8 14 14 N 1.31409 * 119.99685 * 357.95654 * 13 11 10 15 15 Si 1.86799 * 119.99992 * 177.95418 * 13 11 10 16 16 H 1.48497 * 109.46930 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47101 * 300.00441 * 15 13 11 18 18 H 1.48497 * 109.47163 * 60.00132 * 15 13 11 19 19 C 1.46504 * 120.00182 * 355.24665 * 10 8 7 20 20 C 1.52998 * 117.50241 * 135.10149 * 19 10 8 21 21 C 1.52993 * 117.50145 * 66.43802 * 19 10 8 22 22 H 1.09005 * 109.47155 * 270.14128 * 1 2 3 23 23 H 1.09000 * 109.47769 * 30.14918 * 1 2 3 24 24 H 1.09009 * 109.47007 * 150.15169 * 1 2 3 25 25 H 1.08000 * 125.98835 * 180.02562 * 6 5 3 26 26 H 0.97000 * 119.99781 * 175.01895 * 14 13 11 27 27 H 1.09000 * 115.54156 * 280.76778 * 19 10 8 28 28 H 1.09001 * 117.49905 * 359.97438 * 20 19 10 29 29 H 1.09000 * 117.49986 * 145.01891 * 20 19 10 30 30 H 1.09002 * 117.50102 * 214.98123 * 21 19 10 31 31 H 1.09001 * 117.49852 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3018 1.0823 0.0000 4 1 2.0029 2.0051 0.0004 5 7 3.6342 0.6546 -0.0063 6 6 3.6597 -0.6496 -0.0047 7 6 2.3246 -1.1130 0.0028 8 6 1.8869 -2.5200 0.0068 9 8 0.9079 -2.8542 -0.6329 10 7 2.5715 -3.4367 0.7192 11 6 2.1101 -4.7238 0.8024 12 1 1.0477 -4.9178 0.7993 13 6 3.0090 -5.7800 0.8906 14 7 4.3018 -5.5472 0.8537 15 14 2.3796 -7.5304 1.0616 16 1 3.5309 -8.4653 1.1361 17 1 1.5678 -7.6458 2.2997 18 1 1.5397 -7.8715 -0.1146 19 6 3.8092 -3.0565 1.4049 20 6 3.9972 -3.5412 2.8438 21 6 3.6982 -2.0660 2.5656 22 1 -0.3634 0.0025 1.0277 23 1 -0.3634 0.8886 -0.5161 24 1 -0.3633 -0.8914 -0.5115 25 1 4.5458 -1.2670 -0.0080 26 1 4.9296 -6.2745 0.9876 27 1 4.6962 -2.9957 0.7743 28 1 3.1999 -4.1426 3.2806 29 1 5.0080 -3.7989 3.1601 30 1 4.5124 -1.3537 2.6990 31 1 2.7044 -1.6968 2.8188 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264819331.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:33 Heat of formation + Delta-G solvation = 73.800175 kcal Electronic energy + Delta-G solvation = -16941.214314 eV Core-core repulsion = 14225.701797 eV Total energy + Delta-G solvation = -2715.512518 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83693 -38.24907 -35.94875 -32.93658 -32.22607 -31.08145 -30.41944 -27.01672 -24.94150 -22.09843 -21.75937 -21.02335 -20.67809 -18.25517 -17.12530 -16.71945 -15.22827 -15.03865 -14.57897 -14.26940 -13.89197 -13.71838 -13.12973 -12.96265 -12.53691 -12.23919 -11.96940 -11.75770 -11.18045 -11.02862 -10.61189 -10.47150 -10.38993 -10.32405 -9.72494 -9.36011 -9.05571 -8.76489 -8.35977 -7.96605 -7.53278 -6.20537 -3.87836 2.13613 2.93936 3.15743 3.25968 3.29165 3.33787 4.17889 4.32324 4.85394 4.87762 5.06597 5.25976 5.33343 5.39699 5.77227 5.89924 5.97274 6.06124 6.14491 6.17891 6.32234 6.41989 6.55408 6.84358 6.98889 7.05116 7.24189 7.57078 7.61511 8.02030 8.27115 8.60229 9.26620 9.48418 10.10036 10.83060 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.009032 C = 0.007820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.235301 B = 3099.192375 C = 3579.923592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 N -0.476 5.476 4 H 0.433 0.567 5 N -0.313 5.313 6 C 0.090 3.910 7 C -0.246 4.246 8 C 0.533 3.467 9 O -0.586 6.586 10 N -0.415 5.415 11 C -0.306 4.306 12 H 0.091 0.909 13 C 0.041 3.959 14 N -0.871 5.871 15 Si 0.921 3.079 16 H -0.285 1.285 17 H -0.275 1.275 18 H -0.273 1.273 19 C 0.133 3.867 20 C -0.139 4.139 21 C -0.216 4.216 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.187 0.813 26 H 0.267 0.733 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 8.955 2.431 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.012 4.012 3 N -0.184 5.184 4 H 0.276 0.724 5 N -0.134 5.134 6 C -0.097 4.097 7 C -0.261 4.261 8 C 0.322 3.678 9 O -0.471 6.471 10 N -0.133 5.133 11 C -0.434 4.434 12 H 0.109 0.891 13 C -0.164 4.164 14 N -0.508 5.508 15 Si 0.748 3.252 16 H -0.210 1.210 17 H -0.201 1.201 18 H -0.198 1.198 19 C 0.028 3.972 20 C -0.177 4.177 21 C -0.254 4.254 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.124 0.876 25 H 0.203 0.797 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.860 9.644 2.066 9.900 hybrid contribution -0.568 -1.178 0.240 1.330 sum -1.429 8.466 2.306 8.890 Atomic orbital electron populations 1.20566 0.86971 1.04624 1.03283 1.21372 0.94359 0.86922 0.98498 1.45995 1.04461 1.07815 1.60101 0.72423 1.77013 0.95891 1.13747 1.26777 1.24157 0.97947 0.91269 0.96330 1.20375 0.92376 0.94837 1.18494 1.17080 0.85718 0.83509 0.81526 1.90571 1.29736 1.81025 1.45725 1.42840 1.20635 1.08499 1.41298 1.19403 0.93282 0.80521 1.50207 0.89103 1.25349 0.95012 0.99602 0.96399 1.69861 1.00818 1.33056 1.47072 0.86094 0.78101 0.82078 0.78956 1.21021 1.20097 1.19828 1.21087 0.89312 0.98858 0.87936 1.22700 1.01378 0.93934 0.99664 1.23468 1.01505 0.93498 1.06964 0.90514 0.91661 0.87607 0.79658 0.92321 0.88071 0.89266 0.89910 0.89883 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.23 36.01 0.37 -0.98 16 2 C 0.12 2.04 7.29 -81.57 -0.59 1.44 16 3 N -0.48 -7.03 7.29 33.87 0.25 -6.79 16 4 H 0.43 4.58 8.96 -182.73 -1.64 2.94 16 5 N -0.31 -5.40 12.63 30.87 0.39 -5.01 16 6 C 0.09 1.68 9.41 -16.97 -0.16 1.52 16 7 C -0.25 -5.06 5.05 -105.07 -0.53 -5.59 16 8 C 0.53 13.32 7.37 -12.55 -0.09 13.23 16 9 O -0.59 -16.22 15.41 5.25 0.08 -16.14 16 10 N -0.41 -10.58 2.90 -108.96 -0.32 -10.89 16 11 C -0.31 -8.40 8.55 -14.97 -0.13 -8.53 16 12 H 0.09 2.59 7.64 -52.49 -0.40 2.19 16 13 C 0.04 1.07 4.99 -17.46 -0.09 0.99 16 14 N -0.87 -22.67 10.68 55.50 0.59 -22.08 16 15 Si 0.92 20.70 29.56 -169.99 -5.02 15.67 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.13 2.95 2.33 -67.93 -0.16 2.80 16 20 C -0.14 -2.88 8.61 -26.69 -0.23 -3.11 16 21 C -0.22 -4.09 8.26 -26.70 -0.22 -4.31 16 22 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.11 1.79 6.65 -51.92 -0.35 1.45 16 25 H 0.19 3.31 6.18 -52.49 -0.32 2.98 16 26 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 27 H 0.10 2.27 6.95 -51.93 -0.36 1.91 16 28 H 0.09 1.99 7.91 -51.93 -0.41 1.58 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 265.20 15.07 4.00 4.00 Total: -1.00 -31.11 265.20 -6.59 -37.70 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.73 Total: 6.08 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.83 Total: -2.55 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.91 Total: -44.77 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.08 Total: -16.14 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.11 -6.59 -37.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264819331.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.502 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds