Wall clock time and date at job start Sun Mar 29 2020 21:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34285 * 126.29269 * 2 1 4 4 H 0.96997 * 125.75690 * 0.02562 * 3 2 1 5 5 N 1.39934 * 108.49414 * 180.27212 * 3 2 1 6 6 C 1.30447 * 108.91713 * 359.75022 * 5 3 2 7 7 C 1.38107 * 126.30102 * 179.85779 * 2 1 3 8 8 C 1.47352 * 126.41799 * 359.97438 * 7 2 1 9 9 O 1.21626 * 120.00191 * 37.48486 * 8 7 2 10 10 N 1.34779 * 119.99762 * 217.47384 * 8 7 2 11 11 C 1.36987 * 120.00092 * 175.23687 * 10 8 7 12 12 H 1.07997 * 119.99860 * 327.00391 * 11 10 8 13 13 C 1.38976 * 120.00131 * 146.99889 * 11 10 8 14 14 N 1.31409 * 119.99685 * 357.95654 * 13 11 10 15 15 Si 1.86799 * 119.99992 * 177.95418 * 13 11 10 16 16 H 1.48497 * 109.46930 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.47101 * 300.00441 * 15 13 11 18 18 H 1.48497 * 109.47163 * 60.00132 * 15 13 11 19 19 C 1.46504 * 120.00182 * 355.24665 * 10 8 7 20 20 C 1.52998 * 117.50241 * 135.10149 * 19 10 8 21 21 C 1.52993 * 117.50145 * 66.43802 * 19 10 8 22 22 H 1.09005 * 109.47155 * 270.14128 * 1 2 3 23 23 H 1.09000 * 109.47769 * 30.14918 * 1 2 3 24 24 H 1.09009 * 109.47007 * 150.15169 * 1 2 3 25 25 H 1.08000 * 125.98835 * 180.02562 * 6 5 3 26 26 H 0.97000 * 119.99781 * 175.01895 * 14 13 11 27 27 H 1.09000 * 115.54156 * 280.76778 * 19 10 8 28 28 H 1.09001 * 117.49905 * 359.97438 * 20 19 10 29 29 H 1.09000 * 117.49986 * 145.01891 * 20 19 10 30 30 H 1.09002 * 117.50102 * 214.98123 * 21 19 10 31 31 H 1.09001 * 117.49852 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3018 1.0823 0.0000 4 1 2.0029 2.0051 0.0004 5 7 3.6342 0.6546 -0.0063 6 6 3.6597 -0.6496 -0.0047 7 6 2.3246 -1.1130 0.0028 8 6 1.8869 -2.5200 0.0068 9 8 0.9079 -2.8542 -0.6329 10 7 2.5715 -3.4367 0.7192 11 6 2.1101 -4.7238 0.8024 12 1 1.0477 -4.9178 0.7993 13 6 3.0090 -5.7800 0.8906 14 7 4.3018 -5.5472 0.8537 15 14 2.3796 -7.5304 1.0616 16 1 3.5309 -8.4653 1.1361 17 1 1.5678 -7.6458 2.2997 18 1 1.5397 -7.8715 -0.1146 19 6 3.8092 -3.0565 1.4049 20 6 3.9972 -3.5412 2.8438 21 6 3.6982 -2.0660 2.5656 22 1 -0.3634 0.0025 1.0277 23 1 -0.3634 0.8886 -0.5161 24 1 -0.3633 -0.8914 -0.5115 25 1 4.5458 -1.2670 -0.0080 26 1 4.9296 -6.2745 0.9876 27 1 4.6962 -2.9957 0.7743 28 1 3.1999 -4.1426 3.2806 29 1 5.0080 -3.7989 3.1601 30 1 4.5124 -1.3537 2.6990 31 1 2.7044 -1.6968 2.8188 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264819331.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:33 Heat of formation + Delta-G solvation = 52.615223 kcal Electronic energy + Delta-G solvation = -16942.132963 eV Core-core repulsion = 14225.701797 eV Total energy + Delta-G solvation = -2716.431166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.26407 -40.04946 -37.78135 -34.84049 -33.57254 -32.93590 -31.91114 -28.43009 -26.79567 -23.80017 -23.30483 -22.61711 -22.25666 -19.91915 -18.80231 -18.40608 -17.07035 -16.70322 -16.05011 -16.00130 -15.65425 -15.15667 -14.86588 -14.59748 -13.84253 -13.73412 -13.60066 -13.15760 -12.95508 -12.84494 -12.49031 -12.19738 -12.10063 -11.82160 -11.49798 -11.04049 -10.63807 -10.45604 -10.22050 -9.55758 -9.38969 -8.18719 -5.94183 0.74392 1.35567 1.43555 1.50403 1.54065 1.93009 2.32690 2.51292 3.07174 3.18299 3.35520 3.77773 3.88528 4.21342 4.26608 4.39620 4.46604 4.61398 4.69329 4.70562 4.87869 5.02754 5.17531 5.23413 5.43290 5.48868 5.51638 5.55802 6.24156 6.39194 6.61952 6.71148 7.27542 7.56234 8.17158 8.82308 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.009032 C = 0.007820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.235301 B = 3099.192375 C = 3579.923592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.140 3.860 3 N -0.450 5.450 4 H 0.455 0.545 5 N -0.312 5.312 6 C 0.090 3.910 7 C -0.288 4.288 8 C 0.524 3.476 9 O -0.629 6.629 10 N -0.428 5.428 11 C -0.340 4.340 12 H 0.065 0.935 13 C 0.011 3.989 14 N -0.880 5.880 15 Si 0.978 3.022 16 H -0.271 1.271 17 H -0.268 1.268 18 H -0.282 1.282 19 C 0.116 3.884 20 C -0.141 4.141 21 C -0.176 4.176 22 H 0.094 0.906 23 H 0.109 0.891 24 H 0.073 0.927 25 H 0.188 0.812 26 H 0.271 0.729 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 10.571 3.147 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.006 3.994 3 N -0.159 5.159 4 H 0.303 0.697 5 N -0.134 5.134 6 C -0.097 4.097 7 C -0.303 4.303 8 C 0.315 3.685 9 O -0.517 6.517 10 N -0.145 5.145 11 C -0.468 4.468 12 H 0.083 0.917 13 C -0.193 4.193 14 N -0.517 5.517 15 Si 0.802 3.198 16 H -0.196 1.196 17 H -0.193 1.193 18 H -0.208 1.208 19 C 0.011 3.989 20 C -0.178 4.178 21 C -0.215 4.215 22 H 0.112 0.888 23 H 0.127 0.873 24 H 0.092 0.908 25 H 0.205 0.795 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.413 11.312 2.804 11.662 hybrid contribution -0.731 -1.589 -0.021 1.749 sum -1.143 9.723 2.783 10.178 Atomic orbital electron populations 1.20640 0.84900 1.05171 1.04560 1.21654 0.95534 0.86420 0.95757 1.45952 1.03390 1.08553 1.58052 0.69692 1.76988 0.96987 1.12760 1.26622 1.24114 0.97325 0.91698 0.96549 1.20108 0.94104 0.93312 1.22766 1.17741 0.84950 0.85300 0.80536 1.90519 1.31570 1.82248 1.47342 1.43019 1.21527 1.08119 1.41814 1.19357 0.92591 0.82404 1.52445 0.91706 1.25966 0.95213 1.02446 0.95637 1.69932 1.01224 1.34040 1.46464 0.85242 0.77881 0.78046 0.78632 1.19596 1.19324 1.20757 1.21063 0.87908 1.01602 0.88334 1.22661 1.01402 0.95232 0.98534 1.23381 1.02079 0.92819 1.03173 0.88790 0.87257 0.90812 0.79521 0.91926 0.88710 0.91405 0.88485 0.86884 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.45 10.23 71.24 0.73 -1.72 16 2 C 0.14 4.48 7.29 42.15 0.31 4.78 16 3 N -0.45 -11.77 7.29 -46.74 -0.34 -12.11 16 4 H 0.46 7.63 8.96 -213.43 -1.91 5.72 16 5 N -0.31 -9.94 12.63 -56.25 -0.71 -10.65 16 6 C 0.09 3.25 9.41 85.66 0.81 4.05 16 7 C -0.29 -11.73 5.05 -20.15 -0.10 -11.83 16 8 C 0.52 26.99 7.37 86.64 0.64 27.63 16 9 O -0.63 -36.40 15.41 -4.11 -0.06 -36.47 16 10 N -0.43 -22.44 2.90 -616.87 -1.79 -24.24 16 11 C -0.34 -19.36 8.55 84.07 0.72 -18.64 16 12 H 0.07 3.92 7.64 -2.91 -0.02 3.90 16 13 C 0.01 0.59 4.99 84.93 0.42 1.01 16 14 N -0.88 -45.99 10.68 21.67 0.23 -45.76 16 15 Si 0.98 42.89 29.56 68.60 2.03 44.92 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 C 0.12 5.13 2.33 44.99 0.10 5.24 16 20 C -0.14 -5.76 8.61 30.62 0.26 -5.49 16 21 C -0.18 -6.41 8.26 30.62 0.25 -6.16 16 22 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 23 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.07 2.49 6.65 -2.38 -0.02 2.47 16 25 H 0.19 6.55 6.18 -2.91 -0.02 6.53 16 26 H 0.27 13.38 8.32 -92.71 -0.77 12.60 16 27 H 0.10 4.29 6.95 -2.39 -0.02 4.27 16 28 H 0.07 3.06 7.91 -2.39 -0.02 3.04 16 29 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -69.04 265.20 2.74 -66.29 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.75 Total: 19.14 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 4.14 Total: -1.13 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -2.61 Total: -92.75 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.06 Total: -36.47 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.04 2.74 -66.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264819331.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.909 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds