Wall clock time and date at job start Sun Mar 29 2020 22:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47183 * 2 1 4 4 C 1.36800 * 120.00318 * 273.75742 * 3 2 1 5 5 H 1.07995 * 119.99707 * 186.67801 * 4 3 2 6 6 C 1.39104 * 119.99929 * 6.67165 * 4 3 2 7 7 N 1.31328 * 119.99933 * 15.43200 * 6 4 3 8 8 Si 1.86799 * 120.00061 * 195.43332 * 6 4 3 9 9 H 1.48494 * 109.47050 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47149 * 120.00223 * 8 6 4 11 11 H 1.48499 * 109.46913 * 240.00105 * 8 6 4 12 12 C 1.34774 * 119.99740 * 93.75289 * 3 2 1 13 13 O 1.21564 * 120.00000 * 184.80117 * 12 3 2 14 14 C 1.47977 * 120.00109 * 4.80555 * 12 3 2 15 15 C 1.40203 * 121.15869 * 55.36297 * 14 12 3 16 16 C 1.38447 * 117.81597 * 180.26333 * 15 14 12 17 17 N 1.31946 * 119.97924 * 359.75303 * 16 15 14 18 18 N 1.28270 * 122.53940 * 359.97438 * 17 16 15 19 19 C 1.31894 * 122.33281 * 359.97438 * 18 17 16 20 20 C 1.50705 * 120.17932 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.46877 * 59.99779 * 1 2 3 22 22 H 1.08995 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47044 * 299.99775 * 1 2 3 24 24 H 1.09005 * 109.46828 * 240.00288 * 2 1 3 25 25 H 1.08997 * 109.47578 * 120.00005 * 2 1 3 26 26 H 0.96990 * 120.00156 * 180.02562 * 7 6 4 27 27 H 1.08007 * 121.08543 * 0.04161 * 15 14 12 28 28 H 1.08000 * 120.01070 * 179.77358 * 16 15 14 29 29 H 1.08999 * 109.46473 * 85.62616 * 20 19 18 30 30 H 1.08998 * 109.47240 * 325.62814 * 20 19 18 31 31 H 1.08990 * 109.47288 * 205.62459 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1732 2.0520 -1.1821 5 1 2.6335 3.0289 -1.1923 6 6 1.7379 1.4758 -2.3710 7 7 0.9195 0.4491 -2.3420 8 14 2.3174 2.1622 -4.0088 9 1 3.2272 3.3113 -3.7698 10 1 3.0408 1.1054 -4.7604 11 1 1.1443 2.6162 -4.7981 12 6 2.3150 1.9910 1.1647 13 8 2.6364 3.1634 1.1724 14 6 2.2496 1.2335 2.4342 15 6 2.9736 0.0455 2.6082 16 6 2.8572 -0.6101 3.8220 17 7 2.0877 -0.1102 4.7702 18 7 1.4268 0.9788 4.6199 19 6 1.4684 1.6808 3.5041 20 6 0.6714 2.9539 3.3799 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 0.6162 0.0471 -3.1709 27 1 3.5986 -0.3472 1.8197 28 1 3.3965 -1.5301 3.9929 29 1 1.2474 3.7843 3.7881 30 1 -0.2627 2.8532 3.9326 31 1 0.4531 3.1448 2.3293 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269979372.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:53 Heat of formation + Delta-G solvation = 41.147239 kcal Electronic energy + Delta-G solvation = -16889.931219 eV Core-core repulsion = 14173.002764 eV Total energy + Delta-G solvation = -2716.928455 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.78712 -38.52736 -35.43106 -33.31441 -32.99508 -31.66384 -29.60538 -27.98835 -25.88670 -24.24427 -22.70426 -22.19351 -19.93723 -17.38772 -17.14974 -16.49732 -15.62282 -15.09792 -14.81748 -14.27414 -14.12277 -13.58171 -13.05463 -12.82689 -12.76906 -12.53436 -12.05797 -11.82443 -11.44407 -11.26329 -10.86632 -10.62565 -10.46979 -10.35079 -10.19105 -9.61175 -9.60566 -9.29533 -9.06561 -8.57182 -7.98444 -6.50049 -4.03253 0.96794 1.22391 2.98633 3.12714 3.19277 3.52327 3.84489 3.98641 4.36001 4.51188 4.78683 4.87022 4.95860 5.16829 5.38279 5.54559 5.86464 5.96122 5.98482 6.10236 6.26338 6.42747 6.48760 6.58671 6.63008 6.73628 7.12591 7.29069 7.69488 7.82824 8.26870 8.91796 9.02626 9.14027 9.69485 10.38457 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037709 B = 0.008120 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.346126 B = 3447.651164 C = 3669.723030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.115 3.885 3 N -0.417 5.417 4 C -0.294 4.294 5 H 0.111 0.889 6 C 0.026 3.974 7 N -0.860 5.860 8 Si 0.933 3.067 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.464 3.536 13 O -0.581 6.581 14 C -0.079 4.079 15 C -0.105 4.105 16 C 0.027 3.973 17 N -0.252 5.252 18 N -0.252 5.252 19 C 0.100 3.900 20 C -0.095 4.095 21 H 0.107 0.893 22 H 0.035 0.965 23 H 0.014 0.986 24 H 0.104 0.896 25 H 0.036 0.964 26 H 0.270 0.730 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -3.591 3.469 5.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.008 4.008 3 N -0.133 5.133 4 C -0.422 4.422 5 H 0.128 0.872 6 C -0.178 4.178 7 N -0.500 5.500 8 Si 0.759 3.241 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.252 3.748 13 O -0.467 6.467 14 C -0.094 4.094 15 C -0.134 4.134 16 C -0.137 4.137 17 N -0.093 5.093 18 N -0.095 5.095 19 C -0.045 4.045 20 C -0.153 4.153 21 H 0.126 0.874 22 H 0.054 0.946 23 H 0.033 0.967 24 H 0.122 0.878 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.168 0.832 28 H 0.187 0.813 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.279 -3.316 4.820 5.857 hybrid contribution 0.792 0.022 -2.282 2.416 sum 1.072 -3.293 2.538 4.293 Atomic orbital electron populations 1.22302 0.96017 0.99992 1.02205 1.21775 0.95464 0.82989 1.00621 1.43871 1.52921 1.11843 1.04664 1.19974 1.36309 1.03840 0.82085 0.87176 1.25411 0.95351 0.96809 1.00199 1.70145 1.28731 1.23178 1.27936 0.85740 0.78829 0.79019 0.80507 1.19038 1.20400 1.20536 1.17413 0.88182 0.86945 0.82257 1.90646 1.54992 1.15389 1.85695 1.21442 0.95711 0.94864 0.97348 1.22582 0.98191 0.94070 0.98604 1.24089 0.97770 1.00965 0.90826 1.72762 1.04062 1.05371 1.27131 1.72840 1.15311 1.01212 1.20131 1.22945 0.94376 0.97435 0.89737 1.20651 0.98575 0.91866 1.04238 0.87445 0.94551 0.96724 0.87772 0.94560 0.91921 0.83210 0.81331 0.89721 0.90624 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.53 37.16 0.35 -2.75 16 2 C 0.11 2.45 5.26 -4.04 -0.02 2.42 16 3 N -0.42 -10.02 2.62 -115.84 -0.30 -10.32 16 4 C -0.29 -7.54 9.49 -15.01 -0.14 -7.68 16 5 H 0.11 2.98 7.24 -52.49 -0.38 2.60 16 6 C 0.03 0.61 5.18 -17.45 -0.09 0.52 16 7 N -0.86 -20.17 7.41 55.50 0.41 -19.76 16 8 Si 0.93 19.00 29.58 -169.99 -5.03 13.98 16 9 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 12 C 0.46 11.00 6.09 -12.27 -0.07 10.93 16 13 O -0.58 -15.48 15.76 5.31 0.08 -15.40 16 14 C -0.08 -1.59 4.94 -104.57 -0.52 -2.10 16 15 C -0.10 -1.76 7.74 -38.77 -0.30 -2.06 16 16 C 0.03 0.41 11.30 -17.43 -0.20 0.21 16 17 N -0.25 -4.51 11.48 30.52 0.35 -4.16 16 18 N -0.25 -4.83 11.42 33.82 0.39 -4.45 16 19 C 0.10 1.94 6.91 -81.97 -0.57 1.38 16 20 C -0.09 -1.66 9.56 36.01 0.34 -1.32 16 21 H 0.11 2.52 5.72 -51.93 -0.30 2.23 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.10 2.34 6.10 -51.93 -0.32 2.03 16 25 H 0.04 0.69 4.43 -51.93 -0.23 0.46 16 26 H 0.27 5.98 8.31 -40.82 -0.34 5.64 16 27 H 0.15 2.24 7.60 -52.48 -0.40 1.84 16 28 H 0.17 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.65 6.71 -51.93 -0.35 1.31 16 LS Contribution 262.32 15.07 3.95 3.95 Total: -1.00 -28.30 262.32 -4.58 -32.87 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.22 Total: 3.73 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.21 Total: -0.45 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.84 Total: -38.68 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.30 -4.58 -32.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269979372.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.021 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds