Wall clock time and date at job start Sun Mar 29 2020 22:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00510 * 2 1 4 4 C 1.38942 * 111.00247 * 123.95974 * 2 1 3 5 5 N 1.32320 * 119.76474 * 341.86659 * 4 2 1 6 6 C 1.31997 * 121.70190 * 179.73261 * 5 4 2 7 7 C 1.38211 * 121.04931 * 0.58397 * 6 5 4 8 8 C 1.38654 * 119.42799 * 359.42951 * 7 6 5 9 9 C 1.39134 * 118.43073 * 0.27176 * 8 7 6 10 10 N 1.39477 * 120.53790 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00221 * 342.03033 * 10 9 8 12 12 O 1.21783 * 119.99794 * 355.25654 * 11 10 9 13 13 C 1.41722 * 119.99975 * 175.26397 * 11 10 9 14 14 H 1.07999 * 120.00507 * 359.97438 * 13 11 10 15 15 C 1.40145 * 119.99632 * 179.97438 * 13 11 10 16 16 N 1.30626 * 120.00066 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99834 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47064 * 90.00291 * 17 15 13 19 19 H 1.48503 * 109.47266 * 210.00061 * 17 15 13 20 20 H 1.48504 * 109.47325 * 330.00428 * 17 15 13 21 21 H 1.09003 * 109.46866 * 296.04475 * 1 2 3 22 22 H 1.09003 * 109.47101 * 56.04305 * 1 2 3 23 23 H 1.08998 * 109.46886 * 176.04330 * 1 2 3 24 24 H 1.08999 * 109.47199 * 184.78452 * 3 2 1 25 25 H 1.09006 * 109.46744 * 304.78290 * 3 2 1 26 26 H 1.08994 * 109.46647 * 64.77891 * 3 2 1 27 27 H 1.08003 * 119.47138 * 180.29113 * 6 5 4 28 28 H 1.08004 * 120.28066 * 179.70603 * 7 6 5 29 29 H 1.07998 * 120.78491 * 180.30447 * 8 7 6 30 30 H 0.97002 * 119.99822 * 162.02288 * 10 9 8 31 31 H 0.97003 * 120.00007 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9670 -0.7246 1.0759 5 7 1.1833 -0.9892 2.1087 6 6 1.6150 -1.6786 3.1483 7 6 2.9151 -2.1443 3.2047 8 6 3.7753 -1.8929 2.1467 9 6 3.2948 -1.1693 1.0598 10 7 4.1223 -0.8908 -0.0278 11 6 5.4604 -0.9895 0.1007 12 8 5.9511 -1.2372 1.1874 13 6 6.2963 -0.8049 -1.0288 14 1 5.8612 -0.5855 -1.9926 15 6 7.6876 -0.9070 -0.8950 16 7 8.2139 -1.1718 0.2708 17 14 8.7893 -0.6643 -2.3838 18 1 9.1552 0.7702 -2.5004 19 1 10.0215 -1.4781 -2.2257 20 1 8.0673 -1.0921 -3.6090 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0818 1.3435 -0.0857 25 1 1.5785 1.9207 -0.8441 26 1 1.7170 1.8675 0.9297 27 1 0.9430 -1.8778 3.9699 28 1 3.2566 -2.7031 4.0635 29 1 4.7941 -2.2507 2.1656 30 1 3.7348 -0.6262 -0.8768 31 1 9.1769 -1.2421 0.3635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274615430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:21 Heat of formation + Delta-G solvation = 18.424347 kcal Electronic energy + Delta-G solvation = -16510.624540 eV Core-core repulsion = 13792.710747 eV Total energy + Delta-G solvation = -2717.913794 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.17102 -37.67040 -36.36746 -33.78344 -32.50751 -30.89924 -29.08645 -27.41241 -26.55593 -24.50173 -22.72961 -21.07916 -20.00477 -17.81829 -16.73983 -16.11367 -15.89618 -15.23841 -14.90570 -14.30199 -14.06593 -13.56691 -13.34623 -12.77198 -12.64778 -12.31754 -12.08072 -11.77488 -11.51835 -11.43887 -11.35605 -11.16764 -10.71805 -10.38833 -9.88059 -9.41595 -9.08446 -9.00269 -8.27910 -7.63493 -6.92159 -6.43768 -4.97966 1.75905 2.06933 3.01548 3.09341 3.12899 3.92625 3.98586 4.24659 4.54634 4.58244 5.08094 5.40623 5.55148 5.59596 5.62108 5.70447 5.78510 5.82627 6.02407 6.10382 6.13444 6.20190 6.68268 6.88834 7.03815 7.15423 7.28574 7.53667 7.79296 7.98035 8.11849 8.55343 8.72811 9.20644 10.28953 10.48303 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033912 B = 0.007423 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.461558 B = 3771.034350 C = 4454.284119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.483 5.483 3 C 0.025 3.975 4 C 0.221 3.779 5 N -0.497 5.497 6 C 0.048 3.952 7 C -0.161 4.161 8 C -0.111 4.111 9 C 0.163 3.837 10 N -0.678 5.678 11 C 0.540 3.460 12 O -0.566 6.566 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.745 5.745 17 Si 0.914 3.086 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.262 1.262 21 H 0.042 0.958 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.176 0.824 30 H 0.400 0.600 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 1.676 -0.600 9.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.203 5.203 3 C -0.122 4.122 4 C -0.014 4.014 5 N -0.209 5.209 6 C -0.111 4.111 7 C -0.182 4.182 8 C -0.139 4.139 9 C 0.057 3.943 10 N -0.318 5.318 11 C 0.350 3.650 12 O -0.451 6.451 13 C -0.569 4.569 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.373 5.373 17 Si 0.738 3.262 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.186 1.186 21 H 0.061 0.939 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.160 0.840 28 H 0.143 0.857 29 H 0.193 0.807 30 H 0.235 0.765 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.046 1.582 -0.299 9.188 hybrid contribution 0.842 0.314 -0.399 0.984 sum -8.203 1.896 -0.699 8.448 Atomic orbital electron populations 1.22146 0.85763 1.02406 1.00447 1.59481 1.09706 1.13701 1.37450 1.22482 1.02035 0.87022 1.00686 1.19391 0.90765 1.00983 0.90222 1.67362 1.38002 1.15220 1.00362 1.22090 0.94460 0.98735 0.95847 1.21977 0.94445 1.02005 0.99754 1.22484 1.02956 0.96414 0.92086 1.18598 0.89650 0.94802 0.91217 1.44112 1.07493 1.68989 1.11218 1.17099 0.78570 0.78869 0.90451 1.90506 1.72664 1.53633 1.28290 1.20063 0.91363 1.50066 0.95396 0.90956 1.25771 0.98581 0.92470 0.96737 1.69996 1.12528 1.31059 1.23668 0.86258 0.79282 0.79023 0.81664 1.19450 1.20175 1.18585 0.93936 0.91911 0.91510 0.90248 0.90756 0.95090 0.84028 0.85659 0.80704 0.76501 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 8.90 60.06 0.53 1.10 16 2 N -0.48 -8.14 4.37 -188.71 -0.82 -8.97 16 3 C 0.02 0.38 9.21 60.07 0.55 0.93 16 4 C 0.22 4.31 6.03 -154.80 -0.93 3.38 16 5 N -0.50 -9.28 8.80 -12.19 -0.11 -9.39 16 6 C 0.05 0.82 11.17 -17.49 -0.20 0.63 16 7 C -0.16 -2.89 10.10 -39.44 -0.40 -3.29 16 8 C -0.11 -2.42 8.91 -39.10 -0.35 -2.77 16 9 C 0.16 3.58 6.37 -83.37 -0.53 3.05 16 10 N -0.68 -15.45 4.37 -12.18 -0.05 -15.50 16 11 C 0.54 14.60 7.44 -14.93 -0.11 14.49 16 12 O -0.57 -16.95 11.72 5.11 0.06 -16.89 16 13 C -0.53 -14.18 9.31 -37.54 -0.35 -14.53 16 14 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 15 C 0.09 2.29 5.50 -17.35 -0.10 2.20 16 16 N -0.75 -20.84 11.73 55.56 0.65 -20.19 16 17 Si 0.91 18.88 29.56 -169.99 -5.02 13.85 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 22 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.08 1.35 6.79 -51.93 -0.35 1.00 16 25 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 28 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 29 H 0.18 4.35 5.39 -52.49 -0.28 4.07 16 30 H 0.40 8.25 7.64 -40.82 -0.31 7.93 16 31 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 LS Contribution 267.03 15.07 4.02 4.02 Total: -1.00 -30.93 267.03 -6.57 -37.51 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -3.42 Total: 10.36 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.87 Total: 5.18 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.33 Total: -54.04 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.06 Total: -16.89 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.93 -6.57 -37.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274615430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.930 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds