Wall clock time and date at job start Sun Mar 29 2020 22:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00510 * 2 1 4 4 C 1.38942 * 111.00247 * 123.95974 * 2 1 3 5 5 N 1.32320 * 119.76474 * 341.86659 * 4 2 1 6 6 C 1.31997 * 121.70190 * 179.73261 * 5 4 2 7 7 C 1.38211 * 121.04931 * 0.58397 * 6 5 4 8 8 C 1.38654 * 119.42799 * 359.42951 * 7 6 5 9 9 C 1.39134 * 118.43073 * 0.27176 * 8 7 6 10 10 N 1.39477 * 120.53790 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00221 * 342.03033 * 10 9 8 12 12 O 1.21783 * 119.99794 * 355.25654 * 11 10 9 13 13 C 1.41722 * 119.99975 * 175.26397 * 11 10 9 14 14 H 1.07999 * 120.00507 * 359.97438 * 13 11 10 15 15 C 1.40145 * 119.99632 * 179.97438 * 13 11 10 16 16 N 1.30626 * 120.00066 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99834 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47064 * 90.00291 * 17 15 13 19 19 H 1.48503 * 109.47266 * 210.00061 * 17 15 13 20 20 H 1.48504 * 109.47325 * 330.00428 * 17 15 13 21 21 H 1.09003 * 109.46866 * 296.04475 * 1 2 3 22 22 H 1.09003 * 109.47101 * 56.04305 * 1 2 3 23 23 H 1.08998 * 109.46886 * 176.04330 * 1 2 3 24 24 H 1.08999 * 109.47199 * 184.78452 * 3 2 1 25 25 H 1.09006 * 109.46744 * 304.78290 * 3 2 1 26 26 H 1.08994 * 109.46647 * 64.77891 * 3 2 1 27 27 H 1.08003 * 119.47138 * 180.29113 * 6 5 4 28 28 H 1.08004 * 120.28066 * 179.70603 * 7 6 5 29 29 H 1.07998 * 120.78491 * 180.30447 * 8 7 6 30 30 H 0.97002 * 119.99822 * 162.02288 * 10 9 8 31 31 H 0.97003 * 120.00007 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9670 -0.7246 1.0759 5 7 1.1833 -0.9892 2.1087 6 6 1.6150 -1.6786 3.1483 7 6 2.9151 -2.1443 3.2047 8 6 3.7753 -1.8929 2.1467 9 6 3.2948 -1.1693 1.0598 10 7 4.1223 -0.8908 -0.0278 11 6 5.4604 -0.9895 0.1007 12 8 5.9511 -1.2372 1.1874 13 6 6.2963 -0.8049 -1.0288 14 1 5.8612 -0.5855 -1.9926 15 6 7.6876 -0.9070 -0.8950 16 7 8.2139 -1.1718 0.2708 17 14 8.7893 -0.6643 -2.3838 18 1 9.1552 0.7702 -2.5004 19 1 10.0215 -1.4781 -2.2257 20 1 8.0673 -1.0921 -3.6090 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0818 1.3435 -0.0857 25 1 1.5785 1.9207 -0.8441 26 1 1.7170 1.8675 0.9297 27 1 0.9430 -1.8778 3.9699 28 1 3.2566 -2.7031 4.0635 29 1 4.7941 -2.2507 2.1656 30 1 3.7348 -0.6262 -0.8768 31 1 9.1769 -1.2421 0.3635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274615430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:21 Heat of formation + Delta-G solvation = -3.265127 kcal Electronic energy + Delta-G solvation = -16511.565067 eV Core-core repulsion = 13792.710747 eV Total energy + Delta-G solvation = -2718.854320 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.72109 -39.53605 -37.72974 -35.62282 -34.52249 -32.46178 -30.71803 -28.64484 -28.42807 -25.87317 -24.38307 -22.52311 -21.86729 -19.64407 -18.23733 -17.75955 -17.73864 -16.86529 -16.30133 -15.77008 -15.68670 -15.09644 -14.91707 -14.63232 -14.21371 -13.91313 -13.39759 -13.22789 -13.06771 -12.88753 -12.73912 -12.72084 -12.62991 -12.02667 -11.62509 -10.96360 -10.87221 -10.58141 -9.90739 -9.50327 -8.57336 -8.39757 -7.04167 0.24822 0.47192 1.39848 1.40404 1.56834 2.19880 2.33880 2.65084 2.86838 2.98552 3.61299 3.72512 4.09117 4.20271 4.35282 4.37512 4.44672 4.61900 4.64446 4.77077 4.89305 5.04880 5.15598 5.22192 5.39434 5.62156 5.80060 5.86921 6.02416 6.10742 6.41916 6.71223 7.06005 7.33370 8.32742 8.51939 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033912 B = 0.007423 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.461558 B = 3771.034350 C = 4454.284119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.492 5.492 3 C 0.029 3.971 4 C 0.230 3.770 5 N -0.501 5.501 6 C 0.063 3.937 7 C -0.157 4.157 8 C -0.136 4.136 9 C 0.127 3.873 10 N -0.672 5.672 11 C 0.527 3.473 12 O -0.607 6.607 13 C -0.561 4.561 14 H 0.090 0.910 15 C 0.034 3.966 16 N -0.797 5.797 17 Si 1.000 3.000 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.249 1.249 21 H 0.040 0.960 22 H 0.093 0.907 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.109 0.891 26 H 0.028 0.972 27 H 0.188 0.812 28 H 0.156 0.844 29 H 0.138 0.862 30 H 0.408 0.592 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.536 2.271 -1.505 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.212 5.212 3 C -0.117 4.117 4 C -0.004 4.004 5 N -0.214 5.214 6 C -0.096 4.096 7 C -0.178 4.178 8 C -0.165 4.165 9 C 0.022 3.978 10 N -0.313 5.313 11 C 0.337 3.663 12 O -0.495 6.495 13 C -0.595 4.595 14 H 0.108 0.892 15 C -0.185 4.185 16 N -0.425 5.425 17 Si 0.819 3.181 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.172 1.172 21 H 0.058 0.942 22 H 0.112 0.888 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.128 0.872 26 H 0.047 0.953 27 H 0.205 0.795 28 H 0.173 0.827 29 H 0.156 0.844 30 H 0.244 0.756 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.673 2.184 -1.206 10.961 hybrid contribution 1.166 0.107 -0.009 1.171 sum -9.507 2.291 -1.215 9.854 Atomic orbital electron populations 1.22224 0.83715 1.02736 1.01729 1.59471 1.11428 1.14191 1.36144 1.22483 1.00701 0.86413 1.02108 1.19547 0.89685 1.00290 0.90925 1.67546 1.37633 1.15673 1.00541 1.22834 0.94450 0.96185 0.96125 1.22248 0.94394 1.01791 0.99344 1.22290 1.02222 0.97847 0.94111 1.18818 0.90935 0.96721 0.91301 1.43641 1.06366 1.69248 1.12032 1.17431 0.80046 0.78558 0.90228 1.90488 1.74036 1.55366 1.29614 1.20566 0.92376 1.50574 0.96025 0.89214 1.26991 1.00031 0.91193 1.00243 1.70137 1.13351 1.32329 1.26661 0.84970 0.76718 0.79336 0.77069 1.18383 1.19522 1.17215 0.94151 0.88805 0.91960 0.92685 0.87232 0.95308 0.79499 0.82663 0.84433 0.75583 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 8.90 127.69 1.14 2.23 16 2 N -0.49 -15.81 4.37 -750.96 -3.28 -19.09 16 3 C 0.03 0.86 9.21 127.69 1.18 2.03 16 4 C 0.23 8.80 6.03 133.33 0.80 9.60 16 5 N -0.50 -17.66 8.80 -192.47 -1.69 -19.36 16 6 C 0.06 1.98 11.17 84.66 0.95 2.93 16 7 C -0.16 -5.50 10.10 22.36 0.23 -5.28 16 8 C -0.14 -6.16 8.91 22.58 0.20 -5.96 16 9 C 0.13 5.68 6.37 38.58 0.25 5.93 16 10 N -0.67 -31.75 4.37 -310.64 -1.36 -33.11 16 11 C 0.53 29.87 7.44 85.10 0.63 30.50 16 12 O -0.61 -38.59 11.72 -4.61 -0.05 -38.64 16 13 C -0.56 -30.54 9.31 23.59 0.22 -30.32 16 14 H 0.09 4.38 7.85 -2.91 -0.02 4.36 16 15 C 0.03 1.81 5.50 85.34 0.47 2.28 16 16 N -0.80 -46.19 11.73 21.85 0.26 -45.93 16 17 Si 1.00 38.71 29.56 68.60 2.03 40.74 16 18 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 21 H 0.04 1.05 7.67 -2.39 -0.02 1.03 16 22 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.05 1.87 6.79 -2.39 -0.02 1.86 16 25 H 0.11 2.37 8.11 -2.38 -0.02 2.35 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.19 4.18 8.06 -2.91 -0.02 4.15 16 28 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.14 7.36 5.39 -2.92 -0.02 7.35 16 30 H 0.41 17.24 7.64 -92.71 -0.71 16.54 16 31 H 0.28 14.61 8.29 -92.71 -0.77 13.85 16 Total: -1.00 -70.32 267.03 2.40 -67.92 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.45 Total: 33.52 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 6.06 Total: 13.95 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -6.08 Total: -117.49 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.05 Total: -38.64 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -70.32 2.40 -67.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274615430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.653 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds