Wall clock time and date at job start Sun Mar 29 2020 22:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99576 * 2 1 4 4 C 1.39676 * 120.00333 * 180.02562 * 2 1 3 5 5 C 1.39517 * 120.41397 * 359.97438 * 4 2 1 6 6 C 1.38204 * 118.43706 * 180.02562 * 5 4 2 7 7 C 1.39264 * 119.18196 * 0.02562 * 6 5 4 8 8 N 1.39072 * 119.61754 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99830 * 174.91611 * 8 7 6 10 10 O 1.21767 * 120.00069 * 5.09187 * 9 8 7 11 11 C 1.41758 * 120.00114 * 185.09120 * 9 8 7 12 12 H 1.08008 * 119.99730 * 0.02562 * 11 9 8 13 13 C 1.40134 * 120.00138 * 180.02562 * 11 9 8 14 14 N 1.30629 * 119.99729 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00043 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46931 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47100 * 119.99978 * 15 13 11 18 18 H 1.48498 * 109.46994 * 240.00007 * 15 13 11 19 19 N 1.32436 * 120.76110 * 0.02562 * 7 6 5 20 20 C 1.31827 * 121.70542 * 359.69428 * 19 7 6 21 21 H 1.08999 * 109.47310 * 90.00334 * 1 2 3 22 22 H 1.09003 * 109.47208 * 329.99470 * 1 2 3 23 23 H 1.09008 * 109.47048 * 209.99857 * 1 2 3 24 24 H 1.09006 * 109.46746 * 90.00633 * 3 2 1 25 25 H 1.08999 * 109.46932 * 209.99582 * 3 2 1 26 26 H 1.08998 * 109.47276 * 330.00196 * 3 2 1 27 27 H 1.08001 * 120.78036 * 359.97438 * 5 4 2 28 28 H 1.08003 * 120.40394 * 179.97438 * 6 5 4 29 29 H 0.96998 * 120.00373 * 354.91770 * 8 7 6 30 30 H 0.97004 * 119.99811 * 179.97438 * 14 13 11 31 31 H 1.08007 * 119.62699 * 180.31175 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4747 -2.4229 -0.0005 6 6 2.2066 -3.5952 -0.0005 7 6 3.5976 -3.5272 0.0000 8 7 4.3431 -4.7012 -0.0005 9 6 5.6859 -4.6467 -0.1035 10 8 6.2534 -3.5694 -0.1025 11 6 6.4375 -5.8437 -0.2127 12 1 5.9341 -6.7992 -0.2139 13 6 7.8337 -5.7871 -0.3192 14 7 8.4424 -4.6313 -0.3182 15 14 8.8240 -7.3643 -0.4639 16 1 7.9043 -8.5299 -0.4427 17 1 9.5834 -7.3566 -1.7402 18 1 9.7717 -7.4600 0.6753 19 7 4.2186 -2.3574 0.0010 20 6 3.5529 -1.2196 -0.0044 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3634 0.8900 0.5139 23 1 -0.3633 -0.8901 0.5138 24 1 2.3791 1.5834 1.0277 25 1 3.1498 1.1385 -0.5138 26 1 1.6083 2.0284 -0.5138 27 1 0.3949 -2.4455 0.0003 28 1 1.7060 -4.5522 -0.0001 29 1 3.8968 -5.5592 0.0731 30 1 9.4089 -4.5921 -0.3916 31 1 4.0936 -0.2847 -0.0085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274620574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:35 Heat of formation + Delta-G solvation = 1.783409 kcal Electronic energy + Delta-G solvation = -15964.174115 eV Core-core repulsion = 13245.538716 eV Total energy + Delta-G solvation = -2718.635399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30435 -39.36061 -37.42401 -35.05075 -34.30796 -33.00556 -30.47735 -29.17610 -28.45732 -25.53994 -24.36827 -22.65213 -21.50677 -19.48215 -18.42346 -17.67491 -17.49405 -16.84279 -16.02486 -15.71065 -15.44552 -15.29234 -14.92562 -14.45349 -14.10856 -13.90388 -13.62856 -13.33536 -13.06052 -12.87514 -12.79802 -12.61850 -12.43485 -11.94769 -11.60368 -10.92745 -10.68413 -10.34670 -9.72404 -9.36791 -8.27887 -7.83317 -6.91567 0.44848 0.73149 1.40893 1.41939 1.60032 2.23677 2.31561 2.47514 2.92541 3.14065 3.80266 3.84438 4.00589 4.19784 4.24864 4.41633 4.52533 4.58324 4.83690 4.86812 4.93857 4.95625 5.10545 5.15821 5.27539 5.53394 5.91802 6.14987 6.35699 6.40842 6.57516 6.80563 7.19179 7.79048 8.52356 8.73139 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.064011 B = 0.005289 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.320868 B = 5292.724005 C = 5704.920051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.641 5.641 3 C 0.091 3.909 4 C 0.117 3.883 5 C -0.120 4.120 6 C -0.171 4.171 7 C 0.293 3.707 8 N -0.678 5.678 9 C 0.519 3.481 10 O -0.578 6.578 11 C -0.570 4.570 12 H 0.091 0.909 13 C 0.028 3.972 14 N -0.808 5.808 15 Si 1.004 2.996 16 H -0.244 1.244 17 H -0.268 1.268 18 H -0.268 1.268 19 N -0.493 5.493 20 C 0.033 3.967 21 H 0.053 0.947 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.411 0.589 30 H 0.276 0.724 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 4.623 0.405 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.356 5.356 3 C -0.052 4.052 4 C 0.013 3.987 5 C -0.150 4.150 6 C -0.195 4.195 7 C 0.060 3.940 8 N -0.326 5.326 9 C 0.325 3.675 10 O -0.460 6.460 11 C -0.605 4.605 12 H 0.109 0.891 13 C -0.188 4.188 14 N -0.438 5.438 15 Si 0.823 3.177 16 H -0.166 1.166 17 H -0.193 1.193 18 H -0.193 1.193 19 N -0.207 5.207 20 C -0.130 4.130 21 H 0.071 0.929 22 H 0.103 0.897 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.188 0.812 28 H 0.179 0.821 29 H 0.247 0.753 30 H 0.086 0.914 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.932 5.607 0.386 15.955 hybrid contribution -0.185 -0.739 -0.018 0.762 sum -15.117 4.867 0.368 15.886 Atomic orbital electron populations 1.21778 0.77752 1.03723 1.01744 1.46298 1.05866 1.02078 1.81341 1.21712 0.97206 0.84755 1.01496 1.18841 0.91766 0.88187 0.99931 1.21162 1.01098 0.89225 1.03564 1.21584 0.90702 1.01092 1.06150 1.19020 0.89322 0.86786 0.98848 1.43841 1.07824 1.05990 1.74921 1.17590 0.80333 0.91117 0.78436 1.90694 1.69128 1.32232 1.53930 1.20629 0.92981 0.93592 1.53333 0.89111 1.27066 0.99255 1.01358 0.91167 1.70220 1.10333 1.28677 1.34522 0.84883 0.77674 0.76617 0.78518 1.16645 1.19317 1.19251 1.67612 1.40986 0.98192 1.13945 1.22464 0.90453 0.95683 1.04415 0.92886 0.89717 0.90899 0.93159 0.92689 0.89058 0.81239 0.82063 0.75295 0.91353 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.21 127.77 1.30 2.69 16 2 N -0.64 -15.09 3.41 -746.60 -2.54 -17.64 16 3 C 0.09 1.80 10.20 127.77 1.30 3.10 16 4 C 0.12 3.75 6.57 38.37 0.25 4.00 16 5 C -0.12 -3.44 9.29 22.57 0.21 -3.23 16 6 C -0.17 -5.74 9.93 22.51 0.22 -5.51 16 7 C 0.29 13.69 7.42 133.06 0.99 14.68 16 8 N -0.68 -33.64 5.37 -316.39 -1.70 -35.33 16 9 C 0.52 32.04 7.53 85.11 0.64 32.68 16 10 O -0.58 -41.09 13.13 -4.56 -0.06 -41.15 16 11 C -0.57 -33.12 9.31 23.60 0.22 -32.90 16 12 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 13 C 0.03 1.61 5.50 85.33 0.47 2.08 16 14 N -0.81 -50.77 11.73 21.85 0.26 -50.51 16 15 Si 1.00 41.29 29.56 68.60 2.03 43.32 16 16 H -0.24 -9.15 7.11 99.48 0.71 -8.44 16 17 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 N -0.49 -25.71 7.86 -192.44 -1.51 -27.23 16 20 C 0.03 1.36 10.38 84.86 0.88 2.24 16 21 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.08 0.91 8.07 -2.39 -0.02 0.89 16 23 H 0.07 0.98 6.24 -2.38 -0.01 0.97 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.05 1.25 6.21 -2.39 -0.01 1.23 16 26 H 0.09 1.25 8.07 -2.39 -0.02 1.23 16 27 H 0.17 3.29 6.26 -2.91 -0.02 3.27 16 28 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.41 16.56 8.65 -92.71 -0.80 15.76 16 30 H 0.28 15.58 8.29 -92.71 -0.77 14.82 16 31 H 0.15 5.59 6.14 -2.91 -0.02 5.57 16 Total: -1.00 -86.21 268.86 3.32 -82.88 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.36 Total: 25.83 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 6.49 Total: 19.83 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -5.50 Total: -130.71 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.06 Total: -41.15 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -86.21 3.32 -82.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274620574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.667 kcal (2) G-P(sol) polarization free energy of solvation -86.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds