Wall clock time and date at job start Sun Mar 29 2020 22:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99446 * 2 1 4 4 C 1.39025 * 120.00000 * 180.02562 * 2 1 3 5 5 C 1.38853 * 119.66745 * 4.99884 * 4 2 1 6 6 C 1.39162 * 119.00079 * 180.02562 * 5 4 2 7 7 N 1.39276 * 120.82682 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99815 * 145.04957 * 7 6 5 9 9 O 1.21712 * 119.99889 * 4.66047 * 8 7 6 10 10 C 1.46225 * 119.99950 * 184.66911 * 8 7 6 11 11 H 1.08004 * 120.00326 * 5.02138 * 10 8 7 12 12 C 1.40113 * 119.99956 * 185.02444 * 10 8 7 13 13 N 1.30644 * 120.00113 * 354.96853 * 12 10 8 14 14 Si 1.86802 * 119.99963 * 174.96187 * 12 10 8 15 15 H 1.48507 * 109.47069 * 95.00418 * 14 12 10 16 16 H 1.48499 * 109.47348 * 215.00288 * 14 12 10 17 17 H 1.48500 * 109.47125 * 335.00617 * 14 12 10 18 18 C 1.39713 * 118.34116 * 359.97438 * 6 5 4 19 19 C 1.37766 * 119.22965 * 0.02562 * 18 6 5 20 20 N 1.32069 * 120.93928 * 359.72311 * 19 18 6 21 21 H 1.09003 * 109.47065 * 90.00277 * 1 2 3 22 22 H 1.08998 * 109.47405 * 329.99660 * 1 2 3 23 23 H 1.09004 * 109.46812 * 209.99578 * 1 2 3 24 24 H 1.09006 * 109.46944 * 90.00468 * 3 2 1 25 25 H 1.09006 * 109.46866 * 209.99748 * 3 2 1 26 26 H 1.08993 * 109.47507 * 330.00199 * 3 2 1 27 27 H 1.08000 * 120.50253 * 0.02562 * 5 4 2 28 28 H 0.97000 * 120.00157 * 325.04043 * 7 6 5 29 29 H 0.96993 * 119.99889 * 179.97438 * 13 12 10 30 30 H 1.07994 * 120.38708 * 180.02562 * 18 6 5 31 31 H 1.07996 * 119.52534 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1601 -1.2040 -0.0005 5 6 1.4629 -2.4001 -0.1062 6 6 2.1726 -3.5972 -0.1048 7 7 1.5117 -4.8188 -0.2083 8 6 2.0816 -5.8383 -0.8809 9 8 3.2086 -5.7199 -1.3250 10 6 1.3457 -7.0866 -1.0773 11 1 0.3177 -7.1639 -0.7552 12 6 1.9742 -8.1824 -1.6832 13 7 3.1838 -8.0595 -2.1613 14 14 1.0827 -9.8193 -1.8073 15 1 0.4167 -9.9212 -3.1307 16 1 2.0597 -10.9277 -1.6582 17 1 0.0629 -9.9103 -0.7317 18 6 3.5645 -3.5429 0.0030 19 6 4.1841 -2.3166 0.1041 20 7 3.4817 -1.1981 0.0948 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 0.8899 0.5139 23 1 -0.3633 -0.8901 0.5138 24 1 2.3791 1.5834 1.0277 25 1 3.1499 1.1385 -0.5138 26 1 1.6083 2.0284 -0.5138 27 1 0.3860 -2.4015 -0.1883 28 1 0.6415 -4.9359 0.2039 29 1 3.6190 -8.8183 -2.5805 30 1 4.1479 -4.4516 0.0071 31 1 5.2597 -2.2690 0.1881 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274671591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:24 Heat of formation + Delta-G solvation = 11.678435 kcal Electronic energy + Delta-G solvation = -15980.948524 eV Core-core repulsion = 13262.742205 eV Total energy + Delta-G solvation = -2718.206319 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81634 -37.73634 -35.92635 -33.80268 -32.54426 -30.14596 -29.74875 -27.95958 -26.36104 -24.82684 -22.40608 -21.55749 -19.58313 -17.77013 -16.97516 -15.93519 -15.44722 -15.07064 -14.94163 -14.86700 -14.15540 -13.76509 -13.43182 -12.99764 -12.58394 -12.49483 -12.33778 -11.98196 -11.89195 -11.35184 -11.21614 -11.11064 -10.70130 -10.37221 -9.81484 -9.37946 -8.98555 -8.95681 -7.77627 -7.52045 -7.08220 -6.38719 -4.86224 1.94430 2.22543 3.04865 3.12354 3.16182 3.23357 3.96188 4.33353 4.52202 4.65681 4.98800 5.24207 5.36286 5.41025 5.57804 5.67334 5.74757 5.82266 5.83615 6.00179 6.10835 6.21134 6.55045 6.99350 7.10585 7.25507 7.30467 7.66367 7.76117 8.00280 8.11410 8.76755 8.81257 9.15014 10.33275 10.52190 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.051135 B = 0.005498 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.442318 B = 5091.472678 C = 5522.526058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.627 5.627 3 C 0.108 3.892 4 C 0.407 3.593 5 C -0.292 4.292 6 C 0.264 3.736 7 N -0.694 5.694 8 C 0.542 3.458 9 O -0.555 6.555 10 C -0.538 4.538 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.758 5.758 14 Si 0.913 3.087 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.230 4.230 19 C 0.146 3.854 20 N -0.572 5.572 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.124 0.876 28 H 0.395 0.605 29 H 0.273 0.727 30 H 0.148 0.852 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 10.803 4.523 12.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.344 5.344 3 C -0.035 4.035 4 C 0.174 3.826 5 C -0.321 4.321 6 C 0.156 3.844 7 N -0.337 5.337 8 C 0.349 3.651 9 O -0.436 6.436 10 C -0.574 4.574 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.386 5.386 14 Si 0.737 3.263 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.255 4.255 19 C -0.009 4.009 20 N -0.292 5.292 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.142 0.858 28 H 0.228 0.772 29 H 0.083 0.917 30 H 0.166 0.834 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.867 11.605 4.115 12.906 hybrid contribution -1.393 -1.629 -0.006 2.144 sum -5.261 9.976 4.110 12.003 Atomic orbital electron populations 1.21570 0.79193 1.02386 1.01053 1.45986 1.04565 1.02981 1.80907 1.21397 0.97354 0.84136 1.00606 1.17884 0.88376 0.84884 0.91458 1.21036 1.00320 0.90889 1.19836 1.17921 0.91955 0.86007 0.88553 1.44151 1.22534 1.10548 1.56458 1.18447 0.86663 0.82410 0.77601 1.90625 1.19559 1.80923 1.52478 1.20852 0.99418 0.95434 1.41697 0.90898 1.25744 0.94575 1.00172 0.92985 1.69986 1.11799 1.31070 1.25757 0.86256 0.79772 0.80904 0.79318 1.19648 1.20181 1.18682 1.22148 0.94454 1.00208 1.08684 1.22130 0.98902 0.86727 0.93118 1.67055 1.05808 1.32079 1.24294 0.93525 0.91740 0.91293 0.94133 0.90720 0.92664 0.85848 0.77166 0.91657 0.83424 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 10.05 59.85 0.60 1.71 16 2 N -0.63 -9.13 3.39 -189.71 -0.64 -9.77 16 3 C 0.11 1.31 10.42 59.85 0.62 1.94 16 4 C 0.41 7.37 7.36 -155.01 -1.14 6.23 16 5 C -0.29 -5.45 9.13 -39.01 -0.36 -5.81 16 6 C 0.26 5.70 6.33 -83.58 -0.53 5.17 16 7 N -0.69 -15.65 5.33 -11.05 -0.06 -15.71 16 8 C 0.54 14.95 7.60 -13.05 -0.10 14.85 16 9 O -0.55 -17.18 12.51 5.18 0.06 -17.11 16 10 C -0.54 -14.53 9.53 -35.67 -0.34 -14.87 16 11 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 12 C 0.09 2.31 5.50 -17.35 -0.10 2.22 16 13 N -0.76 -21.81 11.84 55.55 0.66 -21.15 16 14 Si 0.91 19.25 29.56 -169.99 -5.03 14.23 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 18 C -0.23 -5.03 8.77 -39.20 -0.34 -5.38 16 19 C 0.15 2.79 11.16 -17.62 -0.20 2.60 16 20 N -0.57 -10.85 9.15 -12.52 -0.11 -10.96 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 23 H 0.07 0.74 6.39 -51.93 -0.33 0.41 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 1.01 7.45 -51.93 -0.39 0.62 16 26 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.12 2.00 6.26 -52.49 -0.33 1.67 16 28 H 0.39 7.56 8.80 -40.82 -0.36 7.20 16 29 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 30 H 0.15 3.61 6.31 -52.49 -0.33 3.28 16 31 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 270.81 15.07 4.08 4.08 Total: -1.00 -33.36 270.81 -6.31 -39.67 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -3.39 Total: 8.08 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -1.88 Total: 8.65 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.16 Total: -57.59 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.06 Total: -17.11 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.36 -6.31 -39.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274671591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.347 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds