Wall clock time and date at job start Sun Mar 29 2020 22:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99446 * 2 1 4 4 C 1.39025 * 120.00000 * 180.02562 * 2 1 3 5 5 C 1.38853 * 119.66745 * 4.99884 * 4 2 1 6 6 C 1.39162 * 119.00079 * 180.02562 * 5 4 2 7 7 N 1.39276 * 120.82682 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99815 * 145.04957 * 7 6 5 9 9 O 1.21712 * 119.99889 * 4.66047 * 8 7 6 10 10 C 1.46225 * 119.99950 * 184.66911 * 8 7 6 11 11 H 1.08004 * 120.00326 * 5.02138 * 10 8 7 12 12 C 1.40113 * 119.99956 * 185.02444 * 10 8 7 13 13 N 1.30644 * 120.00113 * 354.96853 * 12 10 8 14 14 Si 1.86802 * 119.99963 * 174.96187 * 12 10 8 15 15 H 1.48507 * 109.47069 * 95.00418 * 14 12 10 16 16 H 1.48499 * 109.47348 * 215.00288 * 14 12 10 17 17 H 1.48500 * 109.47125 * 335.00617 * 14 12 10 18 18 C 1.39713 * 118.34116 * 359.97438 * 6 5 4 19 19 C 1.37766 * 119.22965 * 0.02562 * 18 6 5 20 20 N 1.32069 * 120.93928 * 359.72311 * 19 18 6 21 21 H 1.09003 * 109.47065 * 90.00277 * 1 2 3 22 22 H 1.08998 * 109.47405 * 329.99660 * 1 2 3 23 23 H 1.09004 * 109.46812 * 209.99578 * 1 2 3 24 24 H 1.09006 * 109.46944 * 90.00468 * 3 2 1 25 25 H 1.09006 * 109.46866 * 209.99748 * 3 2 1 26 26 H 1.08993 * 109.47507 * 330.00199 * 3 2 1 27 27 H 1.08000 * 120.50253 * 0.02562 * 5 4 2 28 28 H 0.97000 * 120.00157 * 325.04043 * 7 6 5 29 29 H 0.96993 * 119.99889 * 179.97438 * 13 12 10 30 30 H 1.07994 * 120.38708 * 180.02562 * 18 6 5 31 31 H 1.07996 * 119.52534 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1601 -1.2040 -0.0005 5 6 1.4629 -2.4001 -0.1062 6 6 2.1726 -3.5972 -0.1048 7 7 1.5117 -4.8188 -0.2083 8 6 2.0816 -5.8383 -0.8809 9 8 3.2086 -5.7199 -1.3250 10 6 1.3457 -7.0866 -1.0773 11 1 0.3177 -7.1639 -0.7552 12 6 1.9742 -8.1824 -1.6832 13 7 3.1838 -8.0595 -2.1613 14 14 1.0827 -9.8193 -1.8073 15 1 0.4167 -9.9212 -3.1307 16 1 2.0597 -10.9277 -1.6582 17 1 0.0629 -9.9103 -0.7317 18 6 3.5645 -3.5429 0.0030 19 6 4.1841 -2.3166 0.1041 20 7 3.4817 -1.1981 0.0948 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 0.8899 0.5139 23 1 -0.3633 -0.8901 0.5138 24 1 2.3791 1.5834 1.0277 25 1 3.1499 1.1385 -0.5138 26 1 1.6083 2.0284 -0.5138 27 1 0.3860 -2.4015 -0.1883 28 1 0.6415 -4.9359 0.2039 29 1 3.6190 -8.8183 -2.5805 30 1 4.1479 -4.4516 0.0071 31 1 5.2597 -2.2690 0.1881 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274671591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:24 Heat of formation + Delta-G solvation = -11.851897 kcal Electronic energy + Delta-G solvation = -15981.968875 eV Core-core repulsion = 13262.742205 eV Total energy + Delta-G solvation = -2719.226670 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36624 -39.55022 -37.26321 -35.62759 -34.60311 -31.76241 -31.20837 -29.07609 -28.26789 -26.08716 -23.99178 -23.16295 -21.26592 -19.64003 -18.47455 -17.73255 -17.09888 -16.57694 -16.34419 -16.17544 -15.83121 -15.25053 -14.94304 -14.61960 -14.27254 -14.08472 -13.36261 -13.22916 -13.00931 -12.96955 -12.84566 -12.73309 -12.57786 -12.02954 -11.53881 -10.96161 -10.74688 -10.53847 -9.82303 -9.26962 -8.44146 -8.36888 -6.97177 0.40553 0.63150 1.40332 1.41826 1.58357 2.06438 2.21703 2.37457 2.82837 3.06388 3.52912 3.74106 4.19634 4.25398 4.39587 4.48119 4.55463 4.59233 4.77271 4.86182 4.92517 4.94097 5.07925 5.24520 5.42166 5.52965 5.76431 6.09140 6.15038 6.23679 6.47651 6.76175 7.26916 7.29296 8.30562 8.54673 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.051135 B = 0.005498 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.442318 B = 5091.472678 C = 5522.526058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.625 5.625 3 C 0.104 3.896 4 C 0.403 3.597 5 C -0.286 4.286 6 C 0.238 3.762 7 N -0.686 5.686 8 C 0.528 3.472 9 O -0.601 6.601 10 C -0.564 4.564 11 H 0.095 0.905 12 C 0.030 3.970 13 N -0.813 5.813 14 Si 1.003 2.997 15 H -0.262 1.262 16 H -0.272 1.272 17 H -0.246 1.246 18 C -0.261 4.261 19 C 0.157 3.843 20 N -0.575 5.575 21 H 0.055 0.945 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.150 0.850 28 H 0.410 0.590 29 H 0.279 0.721 30 H 0.112 0.888 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 11.849 4.933 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.340 5.340 3 C -0.039 4.039 4 C 0.168 3.832 5 C -0.314 4.314 6 C 0.132 3.868 7 N -0.330 5.330 8 C 0.335 3.665 9 O -0.486 6.486 10 C -0.599 4.599 11 H 0.113 0.887 12 C -0.186 4.186 13 N -0.441 5.441 14 Si 0.821 3.179 15 H -0.187 1.187 16 H -0.197 1.197 17 H -0.169 1.169 18 C -0.287 4.287 19 C 0.001 3.999 20 N -0.296 5.296 21 H 0.074 0.926 22 H 0.115 0.885 23 H 0.088 0.912 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.167 0.833 28 H 0.246 0.754 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.199 12.740 4.559 14.883 hybrid contribution -0.705 -1.722 -0.100 1.863 sum -6.903 11.018 4.459 13.745 Atomic orbital electron populations 1.21864 0.76857 1.04101 1.02159 1.46388 1.06130 1.02377 1.79129 1.21572 0.97112 0.83679 1.01499 1.18246 0.88326 0.86316 0.90266 1.21173 1.01475 0.89852 1.18944 1.18163 0.92159 0.86495 0.89993 1.43692 1.22960 1.10251 1.56111 1.18832 0.86346 0.83685 0.77665 1.90590 1.21425 1.82099 1.54471 1.21408 1.00578 0.95790 1.42133 0.88652 1.27021 0.95211 1.04720 0.91679 1.70146 1.14132 1.32871 1.26987 0.84928 0.78432 0.74545 0.79964 1.18677 1.19701 1.16906 1.21976 0.94903 1.00006 1.11834 1.22433 1.00163 0.85789 0.91510 1.67202 1.06449 1.31417 1.24560 0.92616 0.88509 0.91200 0.93153 0.92405 0.89347 0.83284 0.75401 0.91134 0.86970 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.66 10.05 127.77 1.28 2.94 16 2 N -0.62 -16.28 3.39 -754.13 -2.56 -18.84 16 3 C 0.10 2.18 10.42 127.77 1.33 3.51 16 4 C 0.40 13.96 7.36 132.96 0.98 14.94 16 5 C -0.29 -10.38 9.13 22.64 0.21 -10.17 16 6 C 0.24 10.52 6.33 38.54 0.24 10.77 16 7 N -0.69 -31.66 5.33 -307.08 -1.64 -33.30 16 8 C 0.53 30.19 7.60 86.32 0.66 30.85 16 9 O -0.60 -39.30 12.51 -4.39 -0.05 -39.36 16 10 C -0.56 -30.83 9.53 24.80 0.24 -30.59 16 11 H 0.10 4.59 7.85 -2.91 -0.02 4.57 16 12 C 0.03 1.63 5.50 85.32 0.47 2.10 16 13 N -0.81 -48.29 11.84 21.85 0.26 -48.04 16 14 Si 1.00 39.24 29.56 68.60 2.03 41.27 16 15 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 16 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 17 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 18 C -0.26 -11.99 8.77 22.51 0.20 -11.80 16 19 C 0.16 6.05 11.16 84.55 0.94 7.00 16 20 N -0.58 -21.30 9.15 -193.54 -1.77 -23.07 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.10 1.16 8.07 -2.39 -0.02 1.14 16 23 H 0.07 1.26 6.39 -2.38 -0.02 1.25 16 24 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.06 1.43 7.45 -2.38 -0.02 1.41 16 26 H 0.09 1.29 8.07 -2.39 -0.02 1.27 16 27 H 0.15 4.50 6.26 -2.91 -0.02 4.48 16 28 H 0.41 15.72 8.80 -92.71 -0.82 14.91 16 29 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 30 H 0.11 5.94 6.31 -2.91 -0.02 5.92 16 31 H 0.17 5.56 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -75.31 270.81 3.16 -72.16 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.34 Total: 29.64 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 6.55 Total: 19.54 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -5.71 Total: -123.24 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.05 Total: -39.36 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -75.31 3.16 -72.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274671591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.303 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds