Wall clock time and date at job start Sun Mar 29 2020 21:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46940 * 2 1 4 4 N 1.46499 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.36688 * 120.00391 * 96.26137 * 4 3 2 6 6 H 1.07999 * 120.00039 * 163.21106 * 5 4 3 7 7 C 1.39178 * 119.99642 * 343.21174 * 5 4 3 8 8 N 1.31275 * 120.00042 * 345.20590 * 7 5 4 9 9 Si 1.86794 * 120.00187 * 165.21001 * 7 5 4 10 10 H 1.48505 * 109.47413 * 89.99814 * 9 7 5 11 11 H 1.48497 * 109.47240 * 209.99987 * 9 7 5 12 12 H 1.48504 * 109.47041 * 330.00177 * 9 7 5 13 13 C 1.34782 * 120.00050 * 276.26333 * 4 3 2 14 14 O 1.21543 * 120.00147 * 183.70522 * 13 4 3 15 15 C 1.48239 * 119.99631 * 3.42418 * 13 4 3 16 16 C 1.39682 * 120.55598 * 187.50328 * 15 13 4 17 17 C 1.38674 * 118.25551 * 179.97438 * 16 15 13 18 18 N 1.32250 * 119.15953 * 0.02562 * 17 16 15 19 19 C 1.31891 * 121.06480 * 359.97438 * 18 17 16 20 20 N 1.31573 * 121.92244 * 359.73611 * 19 18 17 21 21 H 1.08997 * 109.47330 * 300.00498 * 1 2 3 22 22 H 1.09002 * 109.46557 * 60.00240 * 1 2 3 23 23 H 1.08997 * 109.47171 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47330 * 239.99502 * 2 1 3 25 25 H 1.09007 * 109.46739 * 119.99331 * 2 1 3 26 26 H 1.08997 * 109.47515 * 59.99616 * 3 2 1 27 27 H 1.09002 * 109.47300 * 299.99305 * 3 2 1 28 28 H 0.97001 * 120.00244 * 180.02562 * 8 7 5 29 29 H 1.07996 * 120.87000 * 0.02562 * 16 15 13 30 30 H 1.07993 * 120.41561 * 180.02562 * 17 16 15 31 31 H 1.07997 * 119.03917 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1890 1.5715 -1.1758 6 1 5.2344 1.8422 -1.1656 7 6 3.5381 1.3538 -2.3866 8 7 2.3719 0.7515 -2.4059 9 14 4.3240 1.9188 -3.9842 10 1 5.1739 0.8302 -4.5299 11 1 3.2622 2.2571 -4.9657 12 1 5.1608 3.1184 -3.7271 13 6 4.1784 1.3154 1.1612 14 8 5.3919 1.3829 1.1702 15 6 3.4386 1.0994 2.4275 16 6 4.1076 1.1217 3.6535 17 6 3.3687 0.9145 4.8085 18 7 2.0666 0.7041 4.7114 19 6 1.4653 0.6893 3.5376 20 7 2.1241 0.8864 2.4159 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6768 1.9563 -0.8900 28 1 1.9184 0.5994 -3.2498 29 1 5.1723 1.2965 3.7006 30 1 3.8504 0.9249 5.7750 31 1 0.4003 0.5149 3.4964 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274978347.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:17 Heat of formation + Delta-G solvation = 43.108294 kcal Electronic energy + Delta-G solvation = -16926.406827 eV Core-core repulsion = 14209.563409 eV Total energy + Delta-G solvation = -2716.843418 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60023 -38.26652 -35.42927 -33.44986 -32.01967 -31.46381 -31.37929 -26.27191 -25.21591 -23.86110 -23.61022 -20.65462 -20.01137 -17.45865 -16.83315 -16.67256 -15.38105 -14.94848 -14.55962 -14.40461 -14.16134 -13.71449 -13.41198 -12.91703 -12.77685 -12.13925 -11.84419 -11.41487 -11.01309 -10.89201 -10.60006 -10.43113 -10.36390 -10.19229 -10.10715 -9.42416 -9.23267 -8.93112 -8.86722 -8.33320 -7.74535 -6.46829 -3.96025 1.11997 1.40279 3.06664 3.15294 3.20998 3.70859 3.94536 4.42350 4.48641 4.51489 4.71657 5.03789 5.29981 5.46878 5.57210 5.94735 6.11236 6.22490 6.23647 6.51536 6.65258 6.78277 6.95280 7.03685 7.15516 7.28418 7.35112 7.52994 7.87743 7.95728 8.35190 8.49773 9.00417 9.23494 9.85981 10.41929 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033383 B = 0.009095 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.543149 B = 3077.842519 C = 3828.108796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C 0.133 3.867 4 N -0.392 5.392 5 C -0.296 4.296 6 H 0.108 0.892 7 C 0.032 3.968 8 N -0.841 5.841 9 Si 0.932 3.068 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.453 3.547 14 O -0.596 6.596 15 C 0.158 3.842 16 C -0.191 4.191 17 C 0.133 3.867 18 N -0.535 5.535 19 C 0.275 3.725 20 N -0.483 5.483 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.093 0.907 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.272 0.728 29 H 0.150 0.850 30 H 0.163 0.837 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 0.148 5.772 7.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C 0.010 3.990 4 N -0.105 5.105 5 C -0.425 4.425 6 H 0.126 0.874 7 C -0.175 4.175 8 N -0.478 5.478 9 Si 0.758 3.242 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.191 1.191 13 C 0.242 3.758 14 O -0.483 6.483 15 C 0.011 3.989 16 C -0.214 4.214 17 C -0.032 4.032 18 N -0.251 5.251 19 C -0.013 4.013 20 N -0.200 5.200 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.111 0.889 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.168 0.832 30 H 0.180 0.820 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.555 -0.008 5.528 7.162 hybrid contribution 0.967 0.238 -0.656 1.193 sum -3.587 0.230 4.872 6.054 Atomic orbital electron populations 1.21509 0.97782 0.99336 1.00082 1.21767 0.93555 0.97785 1.01624 1.21715 0.78723 0.98074 1.00458 1.43873 1.06841 1.54619 1.05128 1.19953 0.97218 1.43362 0.82002 0.87435 1.25511 0.96327 0.95616 1.00031 1.70079 1.14805 1.35426 1.27474 0.85836 0.78760 0.79537 0.80111 1.20021 1.20504 1.19139 1.17399 0.86635 0.89001 0.82727 1.90602 1.12665 1.59525 1.85502 1.22211 0.89573 0.91582 0.95508 1.22826 1.03333 1.02031 0.93247 1.23055 0.89677 0.91951 0.98483 1.68254 1.11499 1.15550 1.29787 1.24964 1.00936 0.92198 0.83190 1.69309 1.08296 1.12150 1.30274 0.94369 0.93483 0.94719 0.88888 0.94287 0.92169 0.89802 0.91682 0.83243 0.81980 0.79420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.11 -2.34 4.95 -26.73 -0.13 -2.47 16 3 C 0.13 3.04 4.14 -4.04 -0.02 3.03 16 4 N -0.39 -10.09 2.63 -115.76 -0.30 -10.40 16 5 C -0.30 -7.94 9.40 -15.04 -0.14 -8.08 16 6 H 0.11 3.01 7.30 -52.49 -0.38 2.63 16 7 C 0.03 0.78 5.05 -17.44 -0.09 0.69 16 8 N -0.84 -20.41 8.09 55.51 0.45 -19.96 16 9 Si 0.93 19.42 29.58 -169.99 -5.03 14.40 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.45 11.55 7.57 -12.15 -0.09 11.46 16 14 O -0.60 -16.69 16.08 5.33 0.09 -16.61 16 15 C 0.16 3.34 6.49 -82.64 -0.54 2.81 16 16 C -0.19 -3.40 9.72 -38.88 -0.38 -3.78 16 17 C 0.13 1.99 11.31 -17.21 -0.19 1.80 16 18 N -0.54 -8.54 10.42 -14.61 -0.15 -8.70 16 19 C 0.28 4.47 12.28 -92.26 -1.13 3.34 16 20 N -0.48 -9.28 4.14 -11.15 -0.05 -9.32 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 2.26 5.92 -51.93 -0.31 1.95 16 25 H 0.04 0.86 6.16 -51.93 -0.32 0.54 16 26 H 0.06 1.31 5.73 -51.93 -0.30 1.01 16 27 H 0.08 2.03 6.13 -51.93 -0.32 1.71 16 28 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 29 H 0.15 2.56 7.75 -52.49 -0.41 2.15 16 30 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 260.91 15.07 3.93 3.93 Total: -1.00 -28.97 260.91 -6.69 -35.66 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.28 Total: 4.11 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -2.34 Total: 6.89 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.05 Total: -48.38 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.09 Total: -16.61 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.97 -6.69 -35.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274978347.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.767 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds