Wall clock time and date at job start Sun Mar 29 2020 21:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46788 * 2 1 4 4 C 1.50701 * 109.47050 * 239.99991 * 2 1 3 5 5 N 1.31818 * 119.02174 * 59.72950 * 4 2 1 6 6 C 1.32233 * 120.90785 * 179.75942 * 5 4 2 7 7 C 1.39391 * 118.99441 * 0.50255 * 6 5 4 8 8 N 1.39597 * 120.88133 * 179.72852 * 7 6 5 9 9 C 1.34773 * 120.00275 * 212.52225 * 8 7 6 10 10 O 1.21746 * 119.99656 * 5.26728 * 9 8 7 11 11 C 1.46185 * 120.00506 * 185.26516 * 9 8 7 12 12 H 1.07997 * 119.99866 * 0.02562 * 11 9 8 13 13 C 1.40125 * 120.00101 * 180.02562 * 11 9 8 14 14 N 1.30635 * 119.99927 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99687 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47452 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47126 * 119.99961 * 15 13 11 18 18 H 1.48507 * 109.46816 * 239.99842 * 15 13 11 19 19 C 1.39376 * 118.23133 * 359.75194 * 7 6 5 20 20 N 1.31817 * 119.01945 * 239.99717 * 4 2 1 21 21 H 1.09002 * 109.47067 * 60.00160 * 1 2 3 22 22 H 1.08992 * 109.47167 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47254 * 299.99997 * 1 2 3 24 24 H 1.08992 * 109.47119 * 119.99804 * 2 1 3 25 25 H 1.08997 * 109.47835 * 59.99926 * 3 2 1 26 26 H 1.09000 * 109.47114 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47186 * 299.99767 * 3 2 1 28 28 H 1.08000 * 120.50260 * 180.23373 * 6 5 4 29 29 H 0.97004 * 120.00410 * 32.52353 * 8 7 6 30 30 H 0.97002 * 119.99875 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.50096 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6977 -0.2466 -2.4181 6 6 2.1214 -0.8379 -3.5223 7 6 2.9238 -1.9727 -3.4158 8 7 3.3884 -2.6313 -4.5556 9 6 3.5645 -3.9674 -4.5372 10 8 3.2287 -4.6122 -3.5607 11 6 4.1587 -4.6424 -5.6898 12 1 4.4570 -4.0703 -6.5559 13 6 4.3414 -6.0315 -5.6707 14 7 3.9801 -6.7235 -4.6233 15 14 5.1014 -6.8938 -7.1432 16 1 5.4203 -5.8929 -8.1927 17 1 6.3465 -7.5855 -6.7234 18 1 4.1407 -7.8887 -7.6843 19 6 3.2496 -2.4326 -2.1411 20 7 2.7889 -1.7803 -1.0871 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.8463 -0.4501 -4.4920 29 1 3.5844 -2.1274 -5.3610 30 1 4.1069 -7.6851 -4.6100 31 1 3.8686 -3.3087 -2.0160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280000656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:09 Heat of formation + Delta-G solvation = -6.290358 kcal Electronic energy + Delta-G solvation = -15941.333808 eV Core-core repulsion = 13222.348304 eV Total energy + Delta-G solvation = -2718.985504 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62161 -37.88395 -35.31339 -33.60567 -33.09952 -32.54732 -29.21672 -27.03060 -26.47786 -24.28082 -23.52860 -20.88844 -19.95518 -18.14997 -16.71304 -16.34359 -15.98932 -15.44749 -14.56035 -14.16301 -14.04335 -13.75075 -12.97263 -12.92816 -12.76895 -12.51707 -12.02311 -11.75835 -11.39931 -11.24214 -11.06328 -10.82659 -10.75954 -10.61383 -10.40195 -10.22487 -9.91186 -9.07038 -8.69623 -7.97731 -7.39314 -6.48275 -4.96471 1.53015 1.67327 2.99372 3.08054 3.12460 3.87114 4.14112 4.25224 4.41025 4.49013 4.68268 5.15315 5.21902 5.32208 5.35539 5.48019 5.65168 5.73389 5.86885 5.94197 5.97342 6.08138 6.34539 6.36713 6.60642 6.89281 7.16837 7.38831 7.53258 7.80324 7.97956 8.68017 8.71626 8.99399 10.19512 10.41753 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.068487 B = 0.005123 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.738296 B = 5464.454091 C = 5649.499139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.018 4.018 3 C -0.138 4.138 4 C 0.260 3.740 5 N -0.494 5.494 6 C 0.083 3.917 7 C 0.093 3.907 8 N -0.686 5.686 9 C 0.538 3.462 10 O -0.560 6.560 11 C -0.533 4.533 12 H 0.075 0.925 13 C 0.085 3.915 14 N -0.755 5.755 15 Si 0.915 3.085 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.133 3.867 20 N -0.498 5.498 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.160 0.840 29 H 0.397 0.603 30 H 0.274 0.726 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.085 10.673 2.457 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 C -0.196 4.196 4 C -0.009 4.009 5 N -0.208 5.208 6 C -0.087 4.087 7 C -0.011 4.011 8 N -0.330 5.330 9 C 0.346 3.654 10 O -0.442 6.442 11 C -0.569 4.569 12 H 0.093 0.907 13 C -0.137 4.137 14 N -0.383 5.383 15 Si 0.739 3.261 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.037 4.037 20 N -0.212 5.212 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.178 0.822 29 H 0.232 0.768 30 H 0.085 0.915 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.624 10.380 3.982 11.423 hybrid contribution 0.763 -0.780 -2.070 2.340 sum -1.861 9.600 1.913 9.964 Atomic orbital electron populations 1.21773 0.93862 1.01949 1.02115 1.19748 0.95953 0.95295 0.92813 1.21768 1.00827 0.94836 1.02148 1.22710 0.94574 0.91034 0.92583 1.67871 1.22299 1.32081 0.98511 1.22922 0.93889 0.94344 0.97543 1.19785 0.95446 0.94866 0.91037 1.44150 1.67634 1.09657 1.11510 1.18522 0.79406 0.77963 0.89550 1.90655 1.53981 1.63302 1.36218 1.20878 1.41997 0.92488 1.01538 0.90663 1.25771 0.93712 0.97444 0.96728 1.69983 1.33401 1.07648 1.27240 0.86178 0.79117 0.79558 0.81212 1.18552 1.19866 1.19912 1.23540 0.95770 0.98256 0.86114 1.68184 1.10917 1.07368 1.34685 0.91699 0.92905 0.92279 0.89267 0.92278 0.93004 0.91722 0.82245 0.76841 0.91537 0.80372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.08 37.16 0.34 -1.40 16 2 C -0.02 -0.25 3.25 -91.77 -0.30 -0.55 16 3 C -0.14 -1.63 9.09 37.16 0.34 -1.30 16 4 C 0.26 4.69 6.34 -157.15 -1.00 3.70 16 5 N -0.49 -8.79 9.78 -10.54 -0.10 -8.89 16 6 C 0.08 1.46 11.26 -16.95 -0.19 1.27 16 7 C 0.09 1.90 6.33 -83.47 -0.53 1.37 16 8 N -0.69 -14.44 5.35 -11.00 -0.06 -14.50 16 9 C 0.54 14.19 7.51 -13.07 -0.10 14.09 16 10 O -0.56 -16.81 12.71 5.15 0.07 -16.74 16 11 C -0.53 -13.86 9.54 -35.69 -0.34 -14.20 16 12 H 0.08 1.76 7.85 -52.49 -0.41 1.35 16 13 C 0.09 2.21 5.50 -17.35 -0.10 2.12 16 14 N -0.76 -21.21 11.82 55.55 0.66 -20.55 16 15 Si 0.92 18.75 29.56 -169.99 -5.02 13.72 16 16 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 C 0.13 2.93 9.94 -16.95 -0.17 2.76 16 20 N -0.50 -10.19 10.29 -10.54 -0.11 -10.29 16 21 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.79 8.01 -51.93 -0.42 0.38 16 28 H 0.16 2.26 8.06 -52.49 -0.42 1.83 16 29 H 0.40 6.93 8.80 -40.82 -0.36 6.57 16 30 H 0.27 6.94 8.29 -40.82 -0.34 6.61 16 31 H 0.18 4.29 6.47 -52.48 -0.34 3.95 16 LS Contribution 274.83 15.07 4.14 4.14 Total: -1.00 -31.46 274.83 -6.08 -37.54 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.61 Total: 7.71 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.04 Total: 7.86 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.39 Total: -54.23 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.07 Total: -16.74 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.46 -6.08 -37.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280000656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.255 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds