Wall clock time and date at job start Sun Mar 29 2020 21:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46788 * 2 1 4 4 C 1.50701 * 109.47050 * 239.99991 * 2 1 3 5 5 N 1.31818 * 119.02174 * 59.72950 * 4 2 1 6 6 C 1.32233 * 120.90785 * 179.75942 * 5 4 2 7 7 C 1.39391 * 118.99441 * 0.50255 * 6 5 4 8 8 N 1.39597 * 120.88133 * 179.72852 * 7 6 5 9 9 C 1.34773 * 120.00275 * 212.52225 * 8 7 6 10 10 O 1.21746 * 119.99656 * 5.26728 * 9 8 7 11 11 C 1.46185 * 120.00506 * 185.26516 * 9 8 7 12 12 H 1.07997 * 119.99866 * 0.02562 * 11 9 8 13 13 C 1.40125 * 120.00101 * 180.02562 * 11 9 8 14 14 N 1.30635 * 119.99927 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99687 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47452 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47126 * 119.99961 * 15 13 11 18 18 H 1.48507 * 109.46816 * 239.99842 * 15 13 11 19 19 C 1.39376 * 118.23133 * 359.75194 * 7 6 5 20 20 N 1.31817 * 119.01945 * 239.99717 * 4 2 1 21 21 H 1.09002 * 109.47067 * 60.00160 * 1 2 3 22 22 H 1.08992 * 109.47167 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47254 * 299.99997 * 1 2 3 24 24 H 1.08992 * 109.47119 * 119.99804 * 2 1 3 25 25 H 1.08997 * 109.47835 * 59.99926 * 3 2 1 26 26 H 1.09000 * 109.47114 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47186 * 299.99767 * 3 2 1 28 28 H 1.08000 * 120.50260 * 180.23373 * 6 5 4 29 29 H 0.97004 * 120.00410 * 32.52353 * 8 7 6 30 30 H 0.97002 * 119.99875 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.50096 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6977 -0.2466 -2.4181 6 6 2.1214 -0.8379 -3.5223 7 6 2.9238 -1.9727 -3.4158 8 7 3.3884 -2.6313 -4.5556 9 6 3.5645 -3.9674 -4.5372 10 8 3.2287 -4.6122 -3.5607 11 6 4.1587 -4.6424 -5.6898 12 1 4.4570 -4.0703 -6.5559 13 6 4.3414 -6.0315 -5.6707 14 7 3.9801 -6.7235 -4.6233 15 14 5.1014 -6.8938 -7.1432 16 1 5.4203 -5.8929 -8.1927 17 1 6.3465 -7.5855 -6.7234 18 1 4.1407 -7.8887 -7.6843 19 6 3.2496 -2.4326 -2.1411 20 7 2.7889 -1.7803 -1.0871 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9564 0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.8463 -0.4501 -4.4920 29 1 3.5844 -2.1274 -5.3610 30 1 4.1069 -7.6851 -4.6100 31 1 3.8686 -3.3087 -2.0160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280000656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:09 Heat of formation + Delta-G solvation = -28.649922 kcal Electronic energy + Delta-G solvation = -15942.303391 eV Core-core repulsion = 13222.348304 eV Total energy + Delta-G solvation = -2719.955087 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.16664 -39.72623 -36.70184 -35.25871 -34.76046 -34.42172 -30.84757 -28.36838 -27.99550 -25.83949 -25.04369 -22.46488 -21.50928 -19.91816 -18.33147 -17.99681 -17.61369 -17.24256 -16.13621 -15.70385 -15.33229 -15.01702 -14.68304 -14.66367 -14.45249 -13.77088 -13.37029 -12.96611 -12.89541 -12.85099 -12.77240 -12.17087 -12.01255 -11.97715 -11.81753 -11.77415 -11.57152 -11.00205 -10.31020 -9.96961 -9.09485 -8.42129 -7.00074 -0.00702 0.08899 1.39445 1.41226 1.59107 2.17641 2.30626 2.64627 2.81900 3.06645 3.22867 3.49902 3.64545 4.03147 4.09141 4.18909 4.26467 4.61441 4.83758 4.86284 4.99168 5.00064 5.08085 5.22972 5.32914 5.37629 5.48905 5.67342 5.81787 6.07611 6.16459 6.73593 7.13939 7.20993 8.23946 8.51248 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.068487 B = 0.005123 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.738296 B = 5464.454091 C = 5649.499139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.023 4.023 3 C -0.130 4.130 4 C 0.261 3.739 5 N -0.491 5.491 6 C 0.110 3.890 7 C 0.070 3.930 8 N -0.674 5.674 9 C 0.526 3.474 10 O -0.608 6.608 11 C -0.556 4.556 12 H 0.100 0.900 13 C 0.030 3.970 14 N -0.811 5.811 15 Si 1.002 2.998 16 H -0.243 1.243 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.112 3.888 20 N -0.518 5.518 21 H 0.062 0.938 22 H 0.036 0.964 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.203 0.797 29 H 0.416 0.584 30 H 0.279 0.721 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 12.610 1.237 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 C -0.188 4.188 4 C -0.007 4.007 5 N -0.204 5.204 6 C -0.061 4.061 7 C -0.033 4.033 8 N -0.319 5.319 9 C 0.334 3.666 10 O -0.494 6.494 11 C -0.592 4.592 12 H 0.118 0.882 13 C -0.187 4.187 14 N -0.440 5.440 15 Si 0.821 3.179 16 H -0.165 1.165 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.057 4.057 20 N -0.232 5.232 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.220 0.780 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.048 12.379 2.764 13.044 hybrid contribution 0.827 -1.245 -1.579 2.174 sum -2.221 11.133 1.185 11.414 Atomic orbital electron populations 1.21750 0.92312 1.01392 1.03650 1.20013 0.97137 0.96331 0.90836 1.21731 1.00329 0.93135 1.03611 1.23641 0.92778 0.89969 0.94296 1.68066 1.22125 1.31721 0.98482 1.23547 0.91214 0.92136 0.99229 1.19852 0.97174 0.96265 0.90020 1.43601 1.67534 1.08283 1.12491 1.18866 0.79068 0.79506 0.89198 1.90622 1.55883 1.65094 1.37778 1.21435 1.42109 0.93440 1.02192 0.88242 1.27024 0.93539 0.98169 0.99962 1.70144 1.35313 1.08305 1.30227 0.84889 0.77861 0.78251 0.76876 1.16545 1.19461 1.19457 1.23150 0.96686 0.98139 0.87732 1.68194 1.12049 1.08524 1.34383 0.91920 0.94493 0.89000 0.89138 0.89171 0.93759 0.91903 0.78040 0.74686 0.91113 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.08 71.98 0.65 -2.35 16 2 C -0.02 -0.60 3.25 -11.54 -0.04 -0.64 16 3 C -0.13 -2.72 9.09 71.98 0.65 -2.07 16 4 C 0.26 9.23 6.34 138.74 0.88 10.11 16 5 N -0.49 -16.50 9.78 -187.25 -1.83 -18.34 16 6 C 0.11 3.64 11.26 84.91 0.96 4.59 16 7 C 0.07 2.88 6.33 38.46 0.24 3.12 16 8 N -0.67 -28.51 5.35 -306.93 -1.64 -30.15 16 9 C 0.53 28.55 7.51 86.31 0.65 29.20 16 10 O -0.61 -38.47 12.71 -4.50 -0.06 -38.53 16 11 C -0.56 -29.07 9.54 24.79 0.24 -28.83 16 12 H 0.10 4.53 7.85 -2.91 -0.02 4.50 16 13 C 0.03 1.56 5.50 85.33 0.47 2.03 16 14 N -0.81 -47.13 11.82 21.85 0.26 -46.88 16 15 Si 1.00 38.13 29.56 68.60 2.03 40.16 16 16 H -0.24 -8.39 7.11 99.48 0.71 -7.69 16 17 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 18 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 19 C 0.11 5.12 9.94 84.91 0.84 5.96 16 20 N -0.52 -21.66 10.29 -187.26 -1.93 -23.59 16 21 H 0.06 1.45 8.00 -2.39 -0.02 1.43 16 22 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.09 2.37 8.09 -2.39 -0.02 2.35 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.35 8.01 -2.39 -0.02 1.33 16 28 H 0.20 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.42 14.05 8.80 -92.71 -0.82 13.23 16 30 H 0.28 14.64 8.29 -92.71 -0.77 13.87 16 31 H 0.14 7.56 6.47 -2.91 -0.02 7.54 16 Total: -1.00 -71.34 274.83 2.71 -68.63 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.34 Total: 27.56 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 5.55 Total: 21.13 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -5.14 Total: -118.96 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.06 Total: -38.53 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -71.34 2.71 -68.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280000656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.982 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds