Wall clock time and date at job start Sun Mar 29 2020 21:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47085 * 89.74959 * 3 2 1 5 5 C 1.36939 * 120.00077 * 89.99663 * 4 3 2 6 6 H 1.07996 * 119.99736 * 170.54551 * 5 4 3 7 7 C 1.38807 * 119.99937 * 350.26932 * 5 4 3 8 8 N 1.31620 * 120.00417 * 332.67730 * 7 5 4 9 9 Si 1.86806 * 119.99936 * 152.68235 * 7 5 4 10 10 H 1.48502 * 109.46996 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46959 * 119.99903 * 9 7 5 12 12 H 1.48497 * 109.47033 * 239.99981 * 9 7 5 13 13 C 1.46502 * 119.99951 * 269.99984 * 4 3 2 14 14 C 1.50706 * 109.46769 * 269.09687 * 13 4 3 15 15 N 1.29951 * 126.28530 * 90.02635 * 14 13 4 16 16 O 1.21302 * 110.24794 * 179.97438 * 15 14 13 17 17 C 1.33642 * 109.81067 * 359.97438 * 16 15 14 18 18 C 1.50704 * 126.54889 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46917 * 269.97081 * 18 17 16 20 20 N 1.31134 * 106.89657 * 359.76537 * 17 16 15 21 21 H 4.40649 * 5.51351 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.47232 * 329.74637 * 3 2 1 23 23 H 1.09007 * 109.46905 * 209.74329 * 3 2 1 24 24 H 0.96993 * 120.00039 * 180.02562 * 8 7 5 25 25 H 1.09005 * 109.46920 * 29.09199 * 13 4 3 26 26 H 1.08994 * 109.47446 * 149.10000 * 13 4 3 27 27 H 1.09003 * 109.47105 * 29.96928 * 18 17 16 28 28 H 1.08995 * 109.46998 * 149.96797 * 18 17 16 29 29 H 1.08998 * 109.46746 * 179.97438 * 19 18 17 30 30 H 1.08991 * 109.47152 * 300.00247 * 19 18 17 31 31 H 1.08998 * 109.47017 * 60.00048 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 -0.0052 -1.3812 5 6 3.3621 1.1780 -2.0319 6 1 3.8632 1.1804 -2.9886 7 6 2.9436 2.3738 -1.4647 8 7 1.9138 2.3886 -0.6450 9 14 3.8417 3.9621 -1.8648 10 1 4.9561 3.6775 -2.8041 11 1 2.8969 4.9204 -2.4927 12 1 4.3864 4.5510 -0.6151 13 6 3.3792 -1.2768 -2.0662 14 6 4.8090 -1.6990 -1.8459 15 7 5.2520 -2.4349 -0.8707 16 8 6.4497 -2.5954 -0.9765 17 6 6.8979 -1.9582 -2.0625 18 6 8.3231 -1.9090 -2.5499 19 6 9.0343 -0.7069 -1.9255 20 7 5.8597 -1.3888 -2.6259 21 1 -1.0500 0.0002 0.0000 22 1 3.0098 -0.8869 0.5178 23 1 3.0090 0.8932 0.5099 24 1 1.6212 3.2242 -0.2490 25 1 2.7097 -2.0390 -1.6675 26 1 3.1967 -1.1554 -3.1339 27 1 8.8376 -2.8257 -2.2614 28 1 8.3326 -1.8132 -3.6356 29 1 10.0652 -0.6716 -2.2776 30 1 8.5198 0.2097 -2.2138 31 1 9.0247 -0.8027 -0.8397 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281281056.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:56 Heat of formation + Delta-G solvation = 148.672989 kcal Electronic energy + Delta-G solvation = -16292.133611 eV Core-core repulsion = 13579.867822 eV Total energy + Delta-G solvation = -2712.265789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.99286 -36.54120 -35.31699 -34.21362 -31.55034 -31.42642 -30.36911 -27.19706 -25.96919 -24.65097 -23.16849 -21.86190 -20.34182 -17.63718 -17.51455 -16.94399 -16.25439 -15.15109 -15.01868 -14.46527 -13.78871 -13.68831 -13.55236 -12.90217 -12.51705 -12.19826 -11.72646 -11.62620 -11.53854 -11.20971 -11.03528 -10.89852 -10.73533 -10.41902 -10.27684 -9.98599 -9.40927 -8.92423 -8.81973 -8.45043 -7.25225 -5.85385 -3.21347 1.66348 2.84802 3.23732 3.35736 3.45020 3.49024 4.14165 4.21145 4.40017 4.53876 4.71246 5.02366 5.05282 5.15672 5.30377 5.59121 5.62713 5.70223 5.82723 5.85021 6.10100 6.17075 6.34794 6.44144 6.60990 6.66584 7.18304 7.38821 7.77133 8.14246 8.77884 9.03360 9.20333 9.68316 10.10662 11.17595 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.008843 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.255165 B = 3165.564813 C = 4142.496363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.094 4.094 3 C 0.266 3.734 4 N -0.573 5.573 5 C -0.269 4.269 6 H 0.083 0.917 7 C 0.007 3.993 8 N -0.880 5.880 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.289 1.289 13 C 0.228 3.772 14 C 0.176 3.824 15 N -0.394 5.394 16 O 0.061 5.939 17 C 0.154 3.846 18 C -0.023 4.023 19 C -0.152 4.152 20 N -0.466 5.466 21 H 0.191 0.809 22 H 0.041 0.959 23 H 0.093 0.907 24 H 0.255 0.745 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.488 -8.075 -1.724 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.097 4.097 3 C 0.141 3.859 4 N -0.292 5.292 5 C -0.397 4.397 6 H 0.101 0.899 7 C -0.192 4.192 8 N -0.523 5.523 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.215 1.215 13 C 0.097 3.903 14 C -0.100 4.100 15 N -0.105 5.105 16 O 0.006 5.994 17 C -0.067 4.067 18 C -0.062 4.062 19 C -0.210 4.210 20 N -0.200 5.200 21 H 0.208 0.792 22 H 0.059 0.941 23 H 0.111 0.889 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.681 -7.983 -1.323 12.617 hybrid contribution 0.258 1.114 -0.161 1.155 sum 9.939 -6.869 -1.484 12.172 Atomic orbital electron populations 1.24148 0.95273 1.08130 1.03913 1.24016 0.95022 0.93867 0.96762 1.17843 0.83230 0.99406 0.85385 1.44099 1.73739 1.00718 1.10609 1.19285 1.32969 0.82710 1.04743 0.89902 1.24813 0.96706 0.97830 0.99848 1.70232 1.21665 1.25908 1.34468 0.86354 0.79995 0.83700 0.77647 1.20111 1.21806 1.21528 1.19139 0.83161 0.89182 0.98792 1.27883 1.01506 0.93237 0.87394 1.74588 0.91053 1.21602 1.23252 1.85214 1.17730 1.56177 1.40299 1.28792 0.99300 0.92709 0.85934 1.20039 0.83119 1.01180 1.01871 1.21785 1.00321 0.97523 1.01378 1.71908 0.97838 1.21444 1.28787 0.79151 0.94071 0.88892 0.93468 0.91178 0.89916 0.88701 0.87744 0.90951 0.91410 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.89 19.25 29.55 0.57 -6.32 16 2 C -0.09 -2.35 11.39 -37.12 -0.42 -2.77 16 3 C 0.27 6.59 5.46 -6.83 -0.04 6.55 16 4 N -0.57 -14.38 2.47 -177.94 -0.44 -14.82 16 5 C -0.27 -7.35 9.67 -15.06 -0.15 -7.50 16 6 H 0.08 2.28 7.97 -52.49 -0.42 1.86 16 7 C 0.01 0.20 4.81 -17.43 -0.08 0.12 16 8 N -0.88 -25.16 9.33 55.49 0.52 -24.64 16 9 Si 0.89 21.78 29.63 -169.99 -5.04 16.75 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.23 4.91 6.29 -5.19 -0.03 4.87 16 14 C 0.18 3.63 7.80 -156.38 -1.22 2.41 16 15 N -0.39 -7.81 12.16 30.90 0.38 -7.44 16 16 O 0.06 1.05 11.31 18.10 0.20 1.26 16 17 C 0.15 2.41 7.77 -13.05 -0.10 2.31 16 18 C -0.02 -0.23 6.56 -27.88 -0.18 -0.41 16 19 C -0.15 -1.46 9.89 37.16 0.37 -1.09 16 20 N -0.47 -9.04 11.55 -9.87 -0.11 -9.15 16 21 H 0.19 3.71 7.80 -54.09 -0.42 3.28 16 22 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 23 H 0.09 2.50 6.47 -51.93 -0.34 2.16 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.07 1.41 8.07 -51.93 -0.42 0.99 16 26 H 0.08 1.73 8.05 -51.93 -0.42 1.31 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 282.09 15.07 4.25 4.25 Total: -1.00 -31.78 282.09 -5.21 -37.00 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -3.68 Total: -1.38 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.29 Total: -1.82 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.34 Total: -56.05 kcal Atomic # 8 Polarization: 1.05 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.04 Total: 16.75 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.78 -5.21 -37.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281281056.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.669 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds