Wall clock time and date at job start Sun Mar 29 2020 21:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47085 * 89.74959 * 3 2 1 5 5 C 1.36939 * 120.00077 * 89.99663 * 4 3 2 6 6 H 1.07996 * 119.99736 * 170.54551 * 5 4 3 7 7 C 1.38807 * 119.99937 * 350.26932 * 5 4 3 8 8 N 1.31620 * 120.00417 * 332.67730 * 7 5 4 9 9 Si 1.86806 * 119.99936 * 152.68235 * 7 5 4 10 10 H 1.48502 * 109.46996 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46959 * 119.99903 * 9 7 5 12 12 H 1.48497 * 109.47033 * 239.99981 * 9 7 5 13 13 C 1.46502 * 119.99951 * 269.99984 * 4 3 2 14 14 C 1.50706 * 109.46769 * 269.09687 * 13 4 3 15 15 N 1.29951 * 126.28530 * 90.02635 * 14 13 4 16 16 O 1.21302 * 110.24794 * 179.97438 * 15 14 13 17 17 C 1.33642 * 109.81067 * 359.97438 * 16 15 14 18 18 C 1.50704 * 126.54889 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46917 * 269.97081 * 18 17 16 20 20 N 1.31134 * 106.89657 * 359.76537 * 17 16 15 21 21 H 4.40649 * 5.51351 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.47232 * 329.74637 * 3 2 1 23 23 H 1.09007 * 109.46905 * 209.74329 * 3 2 1 24 24 H 0.96993 * 120.00039 * 180.02562 * 8 7 5 25 25 H 1.09005 * 109.46920 * 29.09199 * 13 4 3 26 26 H 1.08994 * 109.47446 * 149.10000 * 13 4 3 27 27 H 1.09003 * 109.47105 * 29.96928 * 18 17 16 28 28 H 1.08995 * 109.46998 * 149.96797 * 18 17 16 29 29 H 1.08998 * 109.46746 * 179.97438 * 19 18 17 30 30 H 1.08991 * 109.47152 * 300.00247 * 19 18 17 31 31 H 1.08998 * 109.47017 * 60.00048 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 -0.0052 -1.3812 5 6 3.3621 1.1780 -2.0319 6 1 3.8632 1.1804 -2.9886 7 6 2.9436 2.3738 -1.4647 8 7 1.9138 2.3886 -0.6450 9 14 3.8417 3.9621 -1.8648 10 1 4.9561 3.6775 -2.8041 11 1 2.8969 4.9204 -2.4927 12 1 4.3864 4.5510 -0.6151 13 6 3.3792 -1.2768 -2.0662 14 6 4.8090 -1.6990 -1.8459 15 7 5.2520 -2.4349 -0.8707 16 8 6.4497 -2.5954 -0.9765 17 6 6.8979 -1.9582 -2.0625 18 6 8.3231 -1.9090 -2.5499 19 6 9.0343 -0.7069 -1.9255 20 7 5.8597 -1.3888 -2.6259 21 1 -1.0500 0.0002 0.0000 22 1 3.0098 -0.8869 0.5178 23 1 3.0090 0.8932 0.5099 24 1 1.6212 3.2242 -0.2490 25 1 2.7097 -2.0390 -1.6675 26 1 3.1967 -1.1554 -3.1339 27 1 8.8376 -2.8257 -2.2614 28 1 8.3326 -1.8132 -3.6356 29 1 10.0652 -0.6716 -2.2776 30 1 8.5198 0.2097 -2.2138 31 1 9.0247 -0.8027 -0.8397 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281281056.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:56 Heat of formation + Delta-G solvation = 127.911454 kcal Electronic energy + Delta-G solvation = -16293.033899 eV Core-core repulsion = 13579.867822 eV Total energy + Delta-G solvation = -2713.166077 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.44842 -38.36280 -36.72569 -35.45161 -33.53111 -33.15764 -31.75897 -28.96842 -27.95988 -25.70981 -24.80058 -23.46497 -21.77058 -19.48632 -19.04253 -18.46221 -18.06497 -17.04554 -16.28289 -15.71417 -15.58912 -15.47015 -15.06835 -14.25189 -13.85579 -13.57884 -13.47933 -13.36911 -12.91631 -12.67818 -12.58090 -12.39864 -12.28491 -12.00538 -11.97889 -11.84516 -10.96571 -10.81299 -10.70486 -10.39564 -9.25940 -7.93577 -5.30899 0.32150 1.32167 1.41887 1.45694 1.56090 2.05189 2.29412 2.47961 2.55723 2.85541 3.16030 3.29251 3.71441 4.03645 4.07074 4.23921 4.27114 4.51950 4.58213 4.73382 4.78988 4.94706 5.00216 5.03366 5.16492 5.26394 5.36065 5.55603 5.64043 6.12042 6.96849 7.32226 7.37045 7.66563 8.07664 9.07695 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.008843 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.255165 B = 3165.564813 C = 4142.496363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.136 4.136 3 C 0.275 3.725 4 N -0.586 5.586 5 C -0.273 4.273 6 H 0.075 0.925 7 C -0.038 4.038 8 N -0.903 5.903 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.290 1.290 13 C 0.231 3.769 14 C 0.160 3.840 15 N -0.408 5.408 16 O 0.069 5.931 17 C 0.173 3.827 18 C -0.022 4.022 19 C -0.149 4.149 20 N -0.501 5.501 21 H 0.226 0.774 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.250 0.750 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.038 0.962 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.992 -8.705 -2.191 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.139 4.139 3 C 0.150 3.850 4 N -0.306 5.306 5 C -0.402 4.402 6 H 0.093 0.907 7 C -0.235 4.235 8 N -0.547 5.547 9 Si 0.782 3.218 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.217 1.217 13 C 0.102 3.898 14 C -0.116 4.116 15 N -0.119 5.119 16 O 0.012 5.988 17 C -0.047 4.047 18 C -0.061 4.061 19 C -0.208 4.208 20 N -0.235 5.235 21 H 0.243 0.757 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.153 0.847 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.058 0.942 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.195 -8.633 -1.811 14.253 hybrid contribution -0.130 1.216 -0.039 1.223 sum 11.065 -7.418 -1.850 13.449 Atomic orbital electron populations 1.25003 0.96265 1.06335 1.02237 1.24304 0.95750 0.95498 0.98376 1.17626 0.83576 0.98565 0.85252 1.44181 1.74348 1.01303 1.10782 1.19390 1.32280 0.83895 1.04613 0.90702 1.25447 0.97341 1.00295 1.00445 1.70361 1.22652 1.26019 1.35627 0.85425 0.78802 0.80345 0.77189 1.19665 1.21908 1.21702 1.19116 0.84169 0.88081 0.98453 1.27462 1.01352 0.94443 0.88339 1.74550 0.92277 1.21817 1.23216 1.85177 1.16690 1.56150 1.40771 1.29912 1.00669 0.89966 0.84201 1.20501 0.79662 1.03182 1.02711 1.21795 1.01892 0.95878 1.01197 1.71876 0.98604 1.23186 1.29838 0.75706 0.92769 0.91706 0.94051 0.90189 0.90002 0.84717 0.86135 0.87423 0.94236 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.74 19.25 74.32 1.43 -11.31 16 2 C -0.14 -6.85 11.39 31.13 0.35 -6.50 16 3 C 0.27 13.86 5.46 84.58 0.46 14.32 16 4 N -0.59 -29.88 2.47 -716.88 -1.77 -31.65 16 5 C -0.27 -15.12 9.67 84.03 0.81 -14.31 16 6 H 0.08 4.18 7.97 -2.91 -0.02 4.15 16 7 C -0.04 -2.14 4.81 84.86 0.41 -1.73 16 8 N -0.90 -52.24 9.33 21.65 0.20 -52.04 16 9 Si 0.95 45.35 29.63 68.60 2.03 47.39 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 13 C 0.23 10.05 6.29 85.63 0.54 10.58 16 14 C 0.16 6.58 7.80 138.47 1.08 7.66 16 15 N -0.41 -15.96 12.16 -60.32 -0.73 -16.69 16 16 O 0.07 2.28 11.31 74.84 0.85 3.12 16 17 C 0.17 5.11 7.77 88.38 0.69 5.79 16 18 C -0.02 -0.36 6.56 29.85 0.20 -0.17 16 19 C -0.15 -2.46 9.89 71.98 0.71 -1.75 16 20 N -0.50 -19.16 11.55 -303.19 -3.50 -22.66 16 21 H 0.23 8.20 7.80 -4.42 -0.03 8.17 16 22 H 0.05 2.51 8.07 -2.39 -0.02 2.49 16 23 H 0.06 3.60 6.47 -2.38 -0.02 3.59 16 24 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 25 H 0.08 3.23 8.07 -2.38 -0.02 3.21 16 26 H 0.08 3.49 8.05 -2.39 -0.02 3.47 16 27 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.67 282.09 4.87 -63.79 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.12 Total: 6.13 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.68 Total: 2.60 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.81 Total: -123.03 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.85 Total: 3.12 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.67 4.87 -63.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281281056.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.705 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds