Wall clock time and date at job start Sun Mar 29 2020 21:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50690 * 120.00078 * 2 1 4 4 N 1.46504 * 109.47144 * 125.00057 * 3 2 1 5 5 C 1.46492 * 120.00228 * 262.45591 * 4 3 2 6 6 C 1.50696 * 109.47430 * 269.99547 * 5 4 3 7 7 H 1.08008 * 119.99869 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00573 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99725 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47153 * 90.00360 * 10 8 6 12 12 H 1.48506 * 109.47257 * 209.99948 * 10 8 6 13 13 H 1.48498 * 109.47309 * 330.00163 * 10 8 6 14 14 C 1.34784 * 119.99795 * 82.45470 * 4 3 2 15 15 O 1.21674 * 119.99844 * 181.28794 * 14 4 3 16 16 C 1.46767 * 119.99641 * 1.28574 * 14 4 3 17 17 C 1.36671 * 126.84183 * 171.32257 * 16 14 4 18 18 N 1.33310 * 107.78467 * 180.29892 * 17 16 14 19 19 C 1.30867 * 109.68724 * 359.73567 * 18 17 16 20 20 N 1.34489 * 109.15958 * 359.97438 * 19 18 17 21 21 H 0.97002 * 126.47346 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00496 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.99822 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99822 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47547 * 5.00631 * 3 2 1 26 26 H 1.08997 * 109.47449 * 244.99913 * 3 2 1 27 27 H 1.09001 * 109.47430 * 30.00050 * 5 4 3 28 28 H 1.09010 * 109.47119 * 149.99842 * 5 4 3 29 29 H 0.96997 * 119.99685 * 180.02562 * 9 8 6 30 30 H 1.08000 * 126.10734 * 0.03536 * 17 16 14 31 31 H 1.07995 * 125.41847 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6177 2.0122 2.3731 6 6 3.0519 3.4538 2.3073 7 1 3.5571 3.8260 1.4283 8 6 2.8033 4.2978 3.3688 9 7 2.1876 3.8446 4.4390 10 14 3.3409 6.0848 3.2870 11 1 2.2492 6.9039 2.7017 12 1 3.6465 6.5730 4.6558 13 1 4.5543 6.1984 2.4386 14 6 4.1957 0.7303 1.0300 15 8 4.9589 0.7324 1.9776 16 6 4.5838 0.0730 -0.2235 17 6 5.8150 -0.4303 -0.5380 18 7 5.7462 -0.9345 -1.7701 19 6 4.5359 -0.7794 -2.2430 20 7 3.7767 -0.1633 -1.3195 21 1 2.8404 0.0743 -1.4080 22 1 -0.5401 -0.9352 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1316 0.0897 26 1 2.6213 1.4025 -0.9313 27 1 1.5363 1.9639 2.5007 28 1 3.1053 1.5240 3.2170 29 1 2.0124 4.4385 5.1857 30 1 6.6888 -0.4175 0.0966 31 1 4.2001 -1.0958 -3.2195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292285723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:21 Heat of formation + Delta-G solvation = 68.766595 kcal Electronic energy + Delta-G solvation = -16449.612113 eV Core-core repulsion = 13733.881323 eV Total energy + Delta-G solvation = -2715.730790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.10402 -38.78897 -36.19008 -33.49492 -32.48736 -32.13378 -29.71953 -27.63217 -25.94524 -23.72198 -22.00031 -21.09888 -20.52766 -19.57951 -17.55818 -16.59926 -16.05971 -15.46279 -15.24265 -14.87925 -14.31768 -14.13047 -13.85948 -13.38109 -13.10545 -12.70264 -12.24314 -11.94050 -11.47955 -11.26973 -10.98383 -10.69978 -10.27080 -10.13100 -10.04811 -9.74015 -9.51405 -9.27302 -8.50269 -8.47663 -7.85733 -6.11383 -4.16951 1.63457 2.05479 3.07449 3.12639 3.26019 3.33569 3.38030 3.73945 3.91612 4.39346 4.64002 4.74763 4.99055 5.04165 5.21927 5.23490 5.39538 5.63148 5.71685 5.86577 5.97288 6.46018 6.57041 6.71356 6.92035 7.30198 7.31861 7.38996 7.84017 8.00041 8.13069 8.20820 8.76585 8.91797 9.48568 10.96726 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026827 B = 0.007685 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.455122 B = 3642.390226 C = 4212.703366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.204 4.204 3 C 0.122 3.878 4 N -0.589 5.589 5 C 0.248 3.752 6 C -0.531 4.531 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.582 3.418 15 O -0.521 6.521 16 C -0.068 4.068 17 C 0.050 3.950 18 N -0.503 5.503 19 C 0.190 3.810 20 N -0.562 5.562 21 H 0.429 0.571 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.181 0.819 31 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -7.380 -12.741 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.223 4.223 3 C -0.003 4.003 4 N -0.319 5.319 5 C 0.129 3.871 6 C -0.570 4.570 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.368 3.632 15 O -0.396 6.396 16 C -0.185 4.185 17 C -0.103 4.103 18 N -0.222 5.222 19 C -0.094 4.094 20 N -0.176 5.176 21 H 0.278 0.722 22 H 0.118 0.882 23 H 0.123 0.877 24 H 0.127 0.873 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.198 0.802 31 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.490 -7.648 -12.398 14.779 hybrid contribution -0.975 1.440 0.297 1.764 sum -3.464 -6.208 -12.102 14.035 Atomic orbital electron populations 1.23959 0.95587 1.02370 0.97386 1.23584 0.97004 0.98916 1.02812 1.20909 0.93435 0.96011 0.89969 1.48178 1.14126 1.53245 1.16398 1.19370 0.96054 0.91680 0.79967 1.21419 1.38627 0.94374 1.02593 0.92355 1.24931 0.94963 0.99076 0.95001 1.69932 1.41341 1.36005 1.05879 0.86476 0.79015 0.84315 0.77523 1.20633 1.20967 1.19793 1.16895 0.82325 0.78824 0.85196 1.90826 1.50919 1.60275 1.37629 1.21695 0.93742 1.11823 0.91198 1.22593 0.96367 0.98181 0.93109 1.70156 1.19058 1.22520 1.10462 1.25093 0.87838 0.99575 0.96870 1.44780 1.14263 1.45066 1.13491 0.72193 0.88182 0.87740 0.87340 0.88105 0.91106 0.94743 0.93416 0.92595 0.80206 0.77422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 14.32 29.01 0.42 -1.25 16 2 C -0.20 -2.54 7.91 -36.03 -0.29 -2.83 16 3 C 0.12 1.85 5.41 -5.20 -0.03 1.82 16 4 N -0.59 -12.27 2.46 -177.95 -0.44 -12.71 16 5 C 0.25 6.34 5.14 -5.20 -0.03 6.32 16 6 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.58 12.52 7.58 -12.81 -0.10 12.42 16 15 O -0.52 -13.32 16.48 5.21 0.09 -13.24 16 16 C -0.07 -1.17 6.62 -82.14 -0.54 -1.72 16 17 C 0.05 0.85 11.67 -17.48 -0.20 0.64 16 18 N -0.50 -7.68 11.20 -14.43 -0.16 -7.84 16 19 C 0.19 2.24 13.01 -90.57 -1.18 1.06 16 20 N -0.56 -7.22 4.50 -10.79 -0.05 -7.27 16 21 H 0.43 4.60 3.77 -40.82 -0.15 4.44 16 22 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 23 H 0.10 1.08 7.84 -52.48 -0.41 0.66 16 24 H 0.11 1.35 7.39 -52.48 -0.39 0.97 16 25 H 0.10 1.55 7.67 -51.93 -0.40 1.15 16 26 H 0.07 0.94 5.11 -51.93 -0.27 0.67 16 27 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.05 1.38 7.40 -51.92 -0.38 1.00 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 30 H 0.18 2.90 8.06 -52.49 -0.42 2.47 16 31 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 272.84 15.07 4.11 4.11 Total: -1.00 -33.62 272.84 -6.34 -39.95 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -3.23 Total: 2.79 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.37 Total: 3.01 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.09 Total: -53.19 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.62 -6.34 -39.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292285723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.721 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds