Wall clock time and date at job start Sun Mar 29 2020 21:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50690 * 120.00078 * 2 1 4 4 N 1.46504 * 109.47144 * 125.00057 * 3 2 1 5 5 C 1.46492 * 120.00228 * 262.45591 * 4 3 2 6 6 C 1.50696 * 109.47430 * 269.99547 * 5 4 3 7 7 H 1.08008 * 119.99869 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00573 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99725 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47153 * 90.00360 * 10 8 6 12 12 H 1.48506 * 109.47257 * 209.99948 * 10 8 6 13 13 H 1.48498 * 109.47309 * 330.00163 * 10 8 6 14 14 C 1.34784 * 119.99795 * 82.45470 * 4 3 2 15 15 O 1.21674 * 119.99844 * 181.28794 * 14 4 3 16 16 C 1.46767 * 119.99641 * 1.28574 * 14 4 3 17 17 C 1.36671 * 126.84183 * 171.32257 * 16 14 4 18 18 N 1.33310 * 107.78467 * 180.29892 * 17 16 14 19 19 C 1.30867 * 109.68724 * 359.73567 * 18 17 16 20 20 N 1.34489 * 109.15958 * 359.97438 * 19 18 17 21 21 H 0.97002 * 126.47346 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00496 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.99822 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99822 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47547 * 5.00631 * 3 2 1 26 26 H 1.08997 * 109.47449 * 244.99913 * 3 2 1 27 27 H 1.09001 * 109.47430 * 30.00050 * 5 4 3 28 28 H 1.09010 * 109.47119 * 149.99842 * 5 4 3 29 29 H 0.96997 * 119.99685 * 180.02562 * 9 8 6 30 30 H 1.08000 * 126.10734 * 0.03536 * 17 16 14 31 31 H 1.07995 * 125.41847 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6177 2.0122 2.3731 6 6 3.0519 3.4538 2.3073 7 1 3.5571 3.8260 1.4283 8 6 2.8033 4.2978 3.3688 9 7 2.1876 3.8446 4.4390 10 14 3.3409 6.0848 3.2870 11 1 2.2492 6.9039 2.7017 12 1 3.6465 6.5730 4.6558 13 1 4.5543 6.1984 2.4386 14 6 4.1957 0.7303 1.0300 15 8 4.9589 0.7324 1.9776 16 6 4.5838 0.0730 -0.2235 17 6 5.8150 -0.4303 -0.5380 18 7 5.7462 -0.9345 -1.7701 19 6 4.5359 -0.7794 -2.2430 20 7 3.7767 -0.1633 -1.3195 21 1 2.8404 0.0743 -1.4080 22 1 -0.5401 -0.9352 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1316 0.0897 26 1 2.6213 1.4025 -0.9313 27 1 1.5363 1.9639 2.5007 28 1 3.1053 1.5240 3.2170 29 1 2.0124 4.4385 5.1857 30 1 6.6888 -0.4175 0.0966 31 1 4.2001 -1.0958 -3.2195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292285723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:21 Heat of formation + Delta-G solvation = 46.509461 kcal Electronic energy + Delta-G solvation = -16450.577255 eV Core-core repulsion = 13733.881323 eV Total energy + Delta-G solvation = -2716.695932 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.29435 -40.39918 -37.66011 -35.33121 -33.86015 -33.55141 -31.10950 -29.41302 -27.30570 -25.58722 -23.29370 -22.49784 -21.69731 -20.71312 -18.93336 -18.68599 -17.50293 -17.20431 -16.60069 -16.18065 -15.97334 -15.42217 -15.10668 -14.65286 -14.48525 -14.30257 -14.06310 -13.41258 -13.21110 -12.93331 -12.62392 -12.38872 -12.27248 -11.75467 -11.40011 -11.15020 -10.93071 -10.67778 -10.51970 -9.86229 -9.49454 -8.26217 -6.41342 0.33827 1.08743 1.35391 1.38905 1.49194 1.88592 1.98369 2.21954 2.39250 2.42926 3.03960 3.46372 3.72791 3.86825 4.01494 4.09061 4.27820 4.46408 4.64937 4.77569 4.91413 4.95066 5.16181 5.39330 5.47959 5.54536 5.65779 5.77248 5.99712 6.33335 6.50252 6.66905 6.90231 7.15102 7.32133 8.81184 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.026827 B = 0.007685 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.455122 B = 3642.390226 C = 4212.703366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.222 4.222 3 C 0.118 3.882 4 N -0.593 5.593 5 C 0.265 3.735 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.968 3.032 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.575 3.425 15 O -0.581 6.581 16 C -0.094 4.094 17 C 0.051 3.949 18 N -0.529 5.529 19 C 0.229 3.771 20 N -0.549 5.549 21 H 0.440 0.560 22 H 0.126 0.874 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.030 0.970 28 H 0.001 0.999 29 H 0.269 0.731 30 H 0.174 0.826 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 -7.463 -15.535 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.241 4.241 3 C -0.005 4.005 4 N -0.323 5.323 5 C 0.144 3.856 6 C -0.586 4.586 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.792 3.208 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.200 1.200 14 C 0.364 3.636 15 O -0.461 6.461 16 C -0.211 4.211 17 C -0.103 4.103 18 N -0.249 5.249 19 C -0.055 4.055 20 N -0.164 5.164 21 H 0.292 0.708 22 H 0.144 0.856 23 H 0.127 0.873 24 H 0.129 0.871 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.019 0.981 29 H 0.078 0.922 30 H 0.191 0.809 31 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -3.728 -7.736 -15.243 17.495 hybrid contribution -0.672 1.378 1.067 1.868 sum -4.401 -6.358 -14.175 16.147 Atomic orbital electron populations 1.24238 0.94922 1.03840 0.93759 1.23316 0.97464 0.97360 1.06008 1.21178 0.92842 0.97771 0.88680 1.48121 1.15183 1.52496 1.16460 1.18810 0.94883 0.90856 0.81063 1.21676 1.38763 0.95545 1.02660 0.92920 1.25827 0.94803 1.03672 0.94497 1.70044 1.42174 1.37698 1.06545 0.85417 0.78855 0.78950 0.77608 1.18594 1.20535 1.19976 1.17431 0.81714 0.78356 0.86094 1.90772 1.52607 1.62673 1.40048 1.20928 0.94819 1.14156 0.91168 1.22656 0.96123 0.97596 0.93895 1.70220 1.21113 1.23849 1.09715 1.26267 0.86217 0.95419 0.97569 1.44648 1.14589 1.44885 1.12279 0.70849 0.85642 0.87271 0.87070 0.88446 0.88924 0.95201 0.98087 0.92249 0.80862 0.71585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.22 -5.12 7.91 25.64 0.20 -4.92 16 3 C 0.12 3.49 5.41 85.63 0.46 3.95 16 4 N -0.59 -25.48 2.46 -835.15 -2.06 -27.54 16 5 C 0.26 14.21 5.14 85.63 0.44 14.65 16 6 C -0.55 -31.45 9.39 25.60 0.24 -31.21 16 7 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.66 5.46 84.65 0.46 1.12 16 9 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 10 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 11 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 14 C 0.58 25.79 7.58 86.47 0.66 26.44 16 15 O -0.58 -31.76 16.48 -4.27 -0.07 -31.83 16 16 C -0.09 -3.23 6.62 40.01 0.26 -2.97 16 17 C 0.05 1.70 11.67 84.10 0.98 2.69 16 18 N -0.53 -14.91 11.20 -199.56 -2.24 -17.14 16 19 C 0.23 4.43 13.01 180.33 2.35 6.77 16 20 N -0.55 -12.64 4.50 -188.04 -0.85 -13.48 16 21 H 0.44 8.05 3.77 -92.71 -0.35 7.70 16 22 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 23 H 0.11 1.94 7.84 -2.91 -0.02 1.92 16 24 H 0.11 2.55 7.39 -2.91 -0.02 2.52 16 25 H 0.10 2.92 7.67 -2.39 -0.02 2.90 16 26 H 0.09 2.28 5.11 -2.39 -0.01 2.26 16 27 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 28 H 0.00 0.06 7.40 -2.38 -0.02 0.05 16 29 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.17 5.83 8.06 -2.91 -0.02 5.80 16 31 H 0.27 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -77.21 272.84 4.92 -72.28 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.80 Total: 11.06 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 7.03 Total: 15.10 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -4.85 Total: -113.22 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.07 Total: -31.83 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.21 4.92 -72.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292285723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.794 kcal (2) G-P(sol) polarization free energy of solvation -77.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds