Wall clock time and date at job start Sun Mar 29 2020 21:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99521 * 2 1 4 4 N 1.46491 * 109.46785 * 125.00601 * 3 2 1 5 5 C 1.46501 * 119.99796 * 264.53686 * 4 3 2 6 6 C 1.50701 * 109.47634 * 270.00683 * 5 4 3 7 7 H 1.08003 * 119.99405 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00293 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00202 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00234 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46833 * 59.99445 * 10 8 6 12 12 H 1.48490 * 109.47097 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46730 * 299.99612 * 10 8 6 14 14 C 1.34773 * 120.00414 * 84.54186 * 4 3 2 15 15 O 1.21609 * 120.00015 * 183.76666 * 14 4 3 16 16 C 1.47432 * 119.99983 * 3.77308 * 14 4 3 17 17 C 1.41289 * 126.41300 * 345.20912 * 16 14 4 18 18 N 1.30447 * 108.02102 * 179.72459 * 17 16 14 19 19 N 1.39928 * 108.89608 * 0.40179 * 18 17 16 20 20 H 0.97008 * 125.75351 * 179.84714 * 19 18 17 21 21 C 1.34260 * 108.49496 * 359.59204 * 19 18 17 22 22 H 1.08010 * 119.99976 * 180.02562 * 1 2 3 23 23 H 1.07995 * 120.00518 * 359.97438 * 1 2 3 24 24 H 1.07997 * 119.99873 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47335 * 4.99805 * 3 2 1 26 26 H 1.09009 * 109.46394 * 245.00201 * 3 2 1 27 27 H 1.09000 * 109.47032 * 30.00505 * 5 4 3 28 28 H 1.09002 * 109.47190 * 150.00246 * 5 4 3 29 29 H 0.97002 * 119.99987 * 180.02562 * 9 8 6 30 30 H 1.08002 * 125.98871 * 359.97438 * 17 16 14 31 31 H 1.07998 * 126.29001 * 180.22053 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5998 1.9726 2.3885 6 6 2.9930 3.4271 2.3560 7 1 3.4873 3.8334 1.4859 8 6 2.7227 4.2387 3.4372 9 7 2.1212 3.7438 4.4969 10 14 3.2107 6.0414 3.3971 11 1 2.5268 6.7142 2.2635 12 1 2.8113 6.6908 4.6714 13 1 4.6814 6.1523 3.2242 14 6 4.2120 0.7672 1.0156 15 8 4.9580 0.7287 1.9752 16 6 4.6403 0.1962 -0.2745 17 6 3.8091 -0.0992 -1.3781 18 7 4.5586 -0.5837 -2.3295 19 7 5.8841 -0.6295 -1.8833 20 1 6.6435 -0.9502 -2.3946 21 6 5.9284 -0.1494 -0.6303 22 1 -0.5400 -0.9354 0.0004 23 1 -0.5401 0.9352 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1317 0.0895 26 1 2.6212 1.4026 -0.9315 27 1 1.5203 1.8909 2.5153 28 1 3.1018 1.4791 3.2207 29 1 1.9307 4.3149 5.2575 30 1 2.7410 0.0535 -1.4271 31 1 6.8099 -0.0519 -0.0140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293594720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:24 Heat of formation + Delta-G solvation = 83.112739 kcal Electronic energy + Delta-G solvation = -16359.515659 eV Core-core repulsion = 13644.406964 eV Total energy + Delta-G solvation = -2715.108695 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.23914 -38.53458 -35.80241 -33.27571 -32.05437 -31.58766 -30.09391 -27.48936 -25.67297 -23.65112 -21.86905 -21.19785 -19.91675 -18.97853 -17.55330 -16.45194 -15.72175 -15.58798 -14.95840 -14.77629 -14.25828 -13.88342 -13.63874 -13.04270 -12.72690 -12.30686 -12.08016 -11.35223 -11.21981 -11.04147 -10.97332 -10.84212 -10.53963 -10.14497 -9.76113 -9.58930 -9.18152 -8.94832 -8.58076 -8.39252 -7.60508 -6.00356 -4.05160 1.76605 2.39182 2.43988 2.83283 3.34368 3.38597 3.41661 3.96264 4.21711 4.47989 4.87129 5.01082 5.17552 5.32986 5.40947 5.42345 5.53707 5.65901 5.88836 6.02350 6.22371 6.49058 6.79180 6.91605 7.15930 7.17341 7.51477 7.58083 7.62493 7.96866 8.28012 8.48930 8.94806 9.17889 9.59901 11.07559 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.007689 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.840219 B = 3640.895109 C = 4241.120678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.182 4.182 3 C 0.119 3.881 4 N -0.586 5.586 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.582 3.418 15 O -0.549 6.549 16 C -0.276 4.276 17 C 0.056 3.944 18 N -0.307 5.307 19 N -0.471 5.471 20 H 0.440 0.560 21 C 0.119 3.881 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.213 0.787 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 -7.803 -12.400 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.202 4.202 3 C -0.004 4.004 4 N -0.316 5.316 5 C 0.129 3.871 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.369 3.631 15 O -0.428 6.428 16 C -0.291 4.291 17 C -0.130 4.130 18 N -0.128 5.128 19 N -0.177 5.177 20 H 0.283 0.717 21 C -0.033 4.033 22 H 0.114 0.886 23 H 0.119 0.881 24 H 0.128 0.872 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.229 0.771 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.087 -8.194 -12.849 15.382 hybrid contribution 0.596 1.163 0.640 1.455 sum 2.683 -7.031 -12.209 14.342 Atomic orbital electron populations 1.23870 0.95763 1.01902 0.99508 1.23540 0.96548 0.99333 1.00753 1.21086 0.93262 0.95218 0.90883 1.47967 1.13099 1.55101 1.15401 1.19292 0.95789 0.92065 0.79946 1.21434 1.38921 0.94246 1.02014 0.92438 1.24925 0.95121 0.98825 0.95172 1.69929 1.41704 1.36134 1.05604 0.86574 0.79084 0.84668 0.77176 1.20269 1.21200 1.20214 1.17181 0.81966 0.77957 0.85963 1.90736 1.53232 1.59362 1.39458 1.20683 0.93263 1.16552 0.98593 1.25383 1.01548 0.95945 0.90159 1.77111 0.87407 1.24628 1.23682 1.46187 1.08963 1.50548 1.12014 0.71657 1.23004 0.99563 0.94174 0.86563 0.88625 0.88133 0.87232 0.89218 0.89515 0.94903 0.93666 0.92693 0.77114 0.79443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 14.32 29.01 0.42 -1.74 16 2 C -0.18 -2.58 7.78 -36.03 -0.28 -2.86 16 3 C 0.12 1.98 5.37 -5.20 -0.03 1.95 16 4 N -0.59 -12.70 2.45 -177.70 -0.44 -13.13 16 5 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 6 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 10 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.58 12.67 7.61 -12.52 -0.10 12.57 16 15 O -0.55 -14.10 16.49 5.27 0.09 -14.01 16 16 C -0.28 -4.68 5.92 -105.07 -0.62 -5.30 16 17 C 0.06 0.82 8.95 -16.98 -0.15 0.67 16 18 N -0.31 -4.28 12.63 30.86 0.39 -3.89 16 19 N -0.47 -5.38 7.29 30.85 0.22 -5.15 16 20 H 0.44 3.18 8.96 -182.72 -1.64 1.54 16 21 C 0.12 1.61 11.86 -16.56 -0.20 1.41 16 22 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 23 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 24 H 0.11 1.52 7.23 -52.49 -0.38 1.14 16 25 H 0.09 1.51 7.68 -51.93 -0.40 1.11 16 26 H 0.09 1.28 4.68 -51.92 -0.24 1.04 16 27 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 30 H 0.21 2.76 3.41 -52.49 -0.18 2.58 16 31 H 0.19 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 272.31 15.07 4.10 4.10 Total: -1.00 -34.57 272.31 -5.76 -40.33 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.44 Total: 1.25 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.41 Total: -0.44 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.91 Total: -48.11 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -34.57 -5.76 -40.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293594720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.447 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds