Wall clock time and date at job start Sun Mar 29 2020 21:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99521 * 2 1 4 4 N 1.46491 * 109.46785 * 125.00601 * 3 2 1 5 5 C 1.46501 * 119.99796 * 264.53686 * 4 3 2 6 6 C 1.50701 * 109.47634 * 270.00683 * 5 4 3 7 7 H 1.08003 * 119.99405 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00293 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00202 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00234 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46833 * 59.99445 * 10 8 6 12 12 H 1.48490 * 109.47097 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46730 * 299.99612 * 10 8 6 14 14 C 1.34773 * 120.00414 * 84.54186 * 4 3 2 15 15 O 1.21609 * 120.00015 * 183.76666 * 14 4 3 16 16 C 1.47432 * 119.99983 * 3.77308 * 14 4 3 17 17 C 1.41289 * 126.41300 * 345.20912 * 16 14 4 18 18 N 1.30447 * 108.02102 * 179.72459 * 17 16 14 19 19 N 1.39928 * 108.89608 * 0.40179 * 18 17 16 20 20 H 0.97008 * 125.75351 * 179.84714 * 19 18 17 21 21 C 1.34260 * 108.49496 * 359.59204 * 19 18 17 22 22 H 1.08010 * 119.99976 * 180.02562 * 1 2 3 23 23 H 1.07995 * 120.00518 * 359.97438 * 1 2 3 24 24 H 1.07997 * 119.99873 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47335 * 4.99805 * 3 2 1 26 26 H 1.09009 * 109.46394 * 245.00201 * 3 2 1 27 27 H 1.09000 * 109.47032 * 30.00505 * 5 4 3 28 28 H 1.09002 * 109.47190 * 150.00246 * 5 4 3 29 29 H 0.97002 * 119.99987 * 180.02562 * 9 8 6 30 30 H 1.08002 * 125.98871 * 359.97438 * 17 16 14 31 31 H 1.07998 * 126.29001 * 180.22053 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5998 1.9726 2.3885 6 6 2.9930 3.4271 2.3560 7 1 3.4873 3.8334 1.4859 8 6 2.7227 4.2387 3.4372 9 7 2.1212 3.7438 4.4969 10 14 3.2107 6.0414 3.3971 11 1 2.5268 6.7142 2.2635 12 1 2.8113 6.6908 4.6714 13 1 4.6814 6.1523 3.2242 14 6 4.2120 0.7672 1.0156 15 8 4.9580 0.7287 1.9752 16 6 4.6403 0.1962 -0.2745 17 6 3.8091 -0.0992 -1.3781 18 7 4.5586 -0.5837 -2.3295 19 7 5.8841 -0.6295 -1.8833 20 1 6.6435 -0.9502 -2.3946 21 6 5.9284 -0.1494 -0.6303 22 1 -0.5400 -0.9354 0.0004 23 1 -0.5401 0.9352 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1317 0.0895 26 1 2.6212 1.4026 -0.9315 27 1 1.5203 1.8909 2.5153 28 1 3.1018 1.4791 3.2207 29 1 1.9307 4.3149 5.2575 30 1 2.7410 0.0535 -1.4271 31 1 6.8099 -0.0519 -0.0140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293594720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:24 Heat of formation + Delta-G solvation = 58.233724 kcal Electronic energy + Delta-G solvation = -16360.594494 eV Core-core repulsion = 13644.406964 eV Total energy + Delta-G solvation = -2716.187530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.41846 -40.14714 -37.35047 -35.20618 -33.66823 -32.78192 -31.39441 -29.34623 -27.12735 -25.48431 -23.19211 -22.62670 -21.10676 -20.24049 -18.95531 -18.56095 -17.25120 -17.00625 -16.49776 -16.22764 -15.92034 -15.28059 -14.97419 -14.39133 -14.25734 -14.08915 -13.58872 -13.27671 -12.95501 -12.61373 -12.45928 -12.24294 -12.19933 -12.08406 -11.65873 -10.80707 -10.65819 -10.61352 -10.30274 -9.86001 -9.36622 -8.18726 -6.33910 0.60471 1.17592 1.30500 1.39274 1.43191 1.50838 1.85329 2.32376 2.50047 2.67688 3.10417 3.66285 3.95213 4.00333 4.15091 4.25997 4.40604 4.43713 4.69622 4.86583 5.07034 5.08101 5.26536 5.36035 5.56758 5.72172 5.79737 5.97460 6.10209 6.25139 6.51900 6.73834 6.82752 7.31304 7.52629 8.88094 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.007689 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.840219 B = 3640.895109 C = 4241.120678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.201 4.201 3 C 0.118 3.882 4 N -0.593 5.593 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.261 1.261 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.576 3.424 15 O -0.604 6.604 16 C -0.313 4.313 17 C 0.064 3.936 18 N -0.312 5.312 19 N -0.446 5.446 20 H 0.461 0.539 21 C 0.142 3.858 22 H 0.120 0.880 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.023 0.977 28 H -0.001 1.001 29 H 0.267 0.733 30 H 0.224 0.776 31 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -7.719 -14.496 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.220 4.220 3 C -0.004 4.004 4 N -0.321 5.321 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.791 3.209 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.202 1.202 14 C 0.366 3.634 15 O -0.487 6.487 16 C -0.328 4.328 17 C -0.122 4.122 18 N -0.134 5.134 19 N -0.153 5.153 20 H 0.309 0.691 21 C -0.013 4.013 22 H 0.138 0.862 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.041 0.959 28 H 0.017 0.983 29 H 0.076 0.924 30 H 0.240 0.760 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.251 -8.139 -15.034 17.243 hybrid contribution 0.542 1.056 1.252 1.725 sum 2.793 -7.083 -13.782 15.745 Atomic orbital electron populations 1.24131 0.95207 1.03266 0.96388 1.23335 0.97017 0.98102 1.03507 1.21314 0.92703 0.96592 0.89767 1.47933 1.14355 1.54678 1.15147 1.18730 0.94367 0.91343 0.81167 1.21704 1.39129 0.95311 1.02192 0.92778 1.25846 0.94832 1.03699 0.94614 1.70053 1.42491 1.37953 1.06263 0.85480 0.78566 0.78873 0.77963 1.18526 1.20306 1.20250 1.17837 0.81215 0.77198 0.87150 1.90686 1.54648 1.61705 1.41669 1.20348 0.95392 1.19763 0.97301 1.25439 1.02081 0.95473 0.89203 1.77099 0.88230 1.24612 1.23450 1.46182 1.09037 1.48775 1.11305 0.69070 1.23272 0.99093 0.91879 0.87016 0.86160 0.87815 0.86800 0.89901 0.87486 0.95862 0.98282 0.92387 0.76017 0.77280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 14.32 67.78 0.97 -2.54 16 2 C -0.20 -5.47 7.78 25.64 0.20 -5.27 16 3 C 0.12 3.91 5.37 85.64 0.46 4.37 16 4 N -0.59 -26.47 2.45 -834.38 -2.05 -28.52 16 5 C 0.27 14.68 5.16 85.63 0.44 15.12 16 6 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 7 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.53 5.46 84.65 0.46 0.99 16 9 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 10 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 11 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 C 0.58 25.74 7.61 86.67 0.66 26.40 16 15 O -0.60 -32.43 16.49 -4.06 -0.07 -32.50 16 16 C -0.31 -10.36 5.92 -20.15 -0.12 -10.47 16 17 C 0.06 1.77 8.95 85.65 0.77 2.54 16 18 N -0.31 -7.85 12.63 -56.27 -0.71 -8.56 16 19 N -0.45 -8.77 7.29 -56.32 -0.41 -9.18 16 20 H 0.46 4.95 8.96 -213.42 -1.91 3.04 16 21 C 0.14 3.54 11.86 84.27 1.00 4.54 16 22 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 23 H 0.10 2.34 7.84 -2.91 -0.02 2.31 16 24 H 0.11 3.03 7.23 -2.91 -0.02 3.01 16 25 H 0.08 2.80 7.68 -2.39 -0.02 2.79 16 26 H 0.11 3.06 4.68 -2.38 -0.01 3.05 16 27 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 28 H 0.00 -0.06 7.37 -2.39 -0.02 -0.08 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.22 5.41 3.41 -2.91 -0.01 5.40 16 31 H 0.21 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -77.12 272.31 3.40 -73.71 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -0.75 Total: 10.19 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.08 Total: 4.04 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -2.88 Total: -102.56 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.07 Total: -32.50 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.12 3.40 -73.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293594720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.948 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds