Wall clock time and date at job start Sun Mar 29 2020 21:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99849 * 2 1 4 4 N 1.46500 * 109.47198 * 125.00568 * 3 2 1 5 5 C 1.46498 * 119.99753 * 88.36579 * 4 3 2 6 6 C 1.50695 * 109.47339 * 94.58520 * 5 4 3 7 7 H 1.08006 * 119.99837 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00422 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00325 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99795 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46938 * 90.00196 * 10 8 6 12 12 H 1.48499 * 109.46974 * 209.99731 * 10 8 6 13 13 H 1.48490 * 109.47007 * 330.00392 * 10 8 6 14 14 C 1.34776 * 120.00050 * 268.36804 * 4 3 2 15 15 O 1.21566 * 119.99625 * 5.21721 * 14 4 3 16 16 C 1.47711 * 120.00116 * 185.21638 * 14 4 3 17 17 C 1.41496 * 126.51943 * 185.81180 * 16 14 4 18 18 C 1.35365 * 105.50460 * 179.90598 * 17 16 14 19 19 N 1.35033 * 107.22527 * 0.36099 * 18 17 16 20 20 H 0.97005 * 124.88500 * 179.76763 * 19 18 17 21 21 N 1.28461 * 110.23573 * 359.76350 * 19 18 17 22 22 H 1.07996 * 119.99918 * 179.97438 * 1 2 3 23 23 H 1.08003 * 120.00096 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.00385 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47106 * 5.00730 * 3 2 1 26 26 H 1.09003 * 109.47122 * 245.00769 * 3 2 1 27 27 H 1.09006 * 109.47174 * 214.57860 * 5 4 3 28 28 H 1.08998 * 109.47493 * 334.57879 * 5 4 3 29 29 H 0.96999 * 120.00532 * 179.97438 * 9 8 6 30 30 H 1.07998 * 127.24962 * 0.02926 * 17 16 14 31 31 H 1.07998 * 126.38583 * 180.16040 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3475 0.7929 0.9793 6 6 5.2960 1.9093 0.6256 7 1 4.9271 2.9193 0.5237 8 6 6.6345 1.6414 0.4319 9 7 7.4621 2.6156 0.1227 10 14 7.2726 -0.1053 0.6088 11 1 7.1996 -0.7943 -0.7047 12 1 8.6828 -0.0725 1.0728 13 1 6.4425 -0.8376 1.5986 14 6 2.6043 1.8524 2.3120 15 8 1.4537 2.2125 2.4674 16 6 3.5755 1.9851 3.4170 17 6 3.2942 2.4012 4.7398 18 6 4.4810 2.3674 5.3899 19 7 5.4128 1.9627 4.5003 20 1 6.3564 1.8526 4.6966 21 7 4.8700 1.7442 3.3567 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3585 2.1316 0.0897 26 1 2.6212 1.4027 -0.9315 27 1 4.6623 0.3318 1.9156 28 1 4.3541 0.0455 0.1860 29 1 8.4039 2.4273 -0.0132 30 1 2.3343 2.6841 5.1459 31 1 4.6515 2.6205 6.4259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293998286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:18 Heat of formation + Delta-G solvation = 78.646905 kcal Electronic energy + Delta-G solvation = -16666.465399 eV Core-core repulsion = 13951.163051 eV Total energy + Delta-G solvation = -2715.302348 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.00142 -38.78748 -35.43695 -33.47267 -32.09031 -31.11758 -30.09533 -27.93136 -26.03071 -23.04778 -22.02379 -21.12228 -19.56903 -18.48154 -17.63509 -16.88286 -16.22371 -15.46386 -15.04320 -14.48178 -14.06453 -13.65459 -13.31520 -13.21878 -12.74740 -12.55700 -12.39825 -11.91340 -11.38670 -11.07522 -10.77857 -10.57248 -10.17179 -9.79084 -9.54663 -9.39566 -9.00536 -8.82298 -8.70422 -8.48867 -7.68729 -6.04762 -3.99353 2.35991 2.55846 2.63345 3.24229 3.32602 3.36105 3.44726 4.03767 4.18664 4.40888 5.11071 5.25546 5.29433 5.33296 5.52929 5.69931 5.96637 6.12261 6.16728 6.20680 6.34058 6.54270 6.82266 6.91389 6.98571 7.10170 7.40914 7.58038 7.65006 8.19951 8.47569 8.58923 8.97864 9.02870 9.56849 11.08946 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.012617 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.215554 B = 2218.781794 C = 3404.948074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.144 3.856 4 N -0.578 5.578 5 C 0.206 3.794 6 C -0.499 4.499 7 H 0.072 0.928 8 C 0.077 3.923 9 N -0.902 5.902 10 Si 0.868 3.132 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.264 1.264 14 C 0.604 3.396 15 O -0.564 6.564 16 C -0.021 4.021 17 C -0.187 4.187 18 C -0.038 4.038 19 N -0.393 5.393 20 H 0.441 0.559 21 N -0.183 5.183 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.024 0.976 29 H 0.261 0.739 30 H 0.154 0.846 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 -4.319 6.927 9.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.307 5.307 5 C 0.085 3.915 6 C -0.538 4.538 7 H 0.090 0.910 8 C -0.124 4.124 9 N -0.542 5.542 10 Si 0.695 3.305 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.189 1.189 14 C 0.391 3.609 15 O -0.442 6.442 16 C -0.182 4.182 17 C -0.216 4.216 18 C -0.181 4.181 19 N -0.107 5.107 20 H 0.285 0.715 21 N -0.019 5.019 22 H 0.110 0.890 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.172 0.828 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.069 -4.432 6.215 9.163 hybrid contribution 0.619 -0.634 0.755 1.164 sum -4.449 -5.066 6.971 9.698 Atomic orbital electron populations 1.23745 0.95815 1.01423 1.01332 1.23387 0.96203 0.99253 0.99175 1.20479 0.92318 0.95045 0.90035 1.47785 1.14869 1.58418 1.09649 1.20048 0.78291 0.95276 0.97880 1.21164 0.91888 0.95068 1.45726 0.90962 1.24714 0.96532 0.96338 0.94799 1.69904 1.03870 1.31550 1.48886 0.86990 0.78361 0.86193 0.78945 1.20384 1.21394 1.18881 1.16921 0.85502 0.77127 0.81324 1.90676 1.18678 1.52501 1.82390 1.21899 0.91158 1.09716 0.95404 1.21670 0.98855 1.07968 0.93081 1.22788 0.89638 1.08016 0.97679 1.43774 1.11239 1.48848 1.06825 0.71523 1.74556 1.08692 1.15319 1.03287 0.88994 0.88485 0.87641 0.90129 0.89281 0.93024 0.95846 0.92884 0.82847 0.80838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 14.32 29.01 0.42 -2.27 16 2 C -0.16 -2.64 9.85 -36.02 -0.35 -3.00 16 3 C 0.14 2.72 5.80 -5.19 -0.03 2.69 16 4 N -0.58 -12.74 2.45 -177.60 -0.44 -13.18 16 5 C 0.21 4.85 3.82 -5.20 -0.02 4.83 16 6 C -0.50 -13.52 8.37 -34.44 -0.29 -13.81 16 7 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16 10 Si 0.87 20.46 27.47 -169.99 -4.67 15.79 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 14 C 0.60 13.72 7.63 -12.39 -0.09 13.63 16 15 O -0.56 -13.28 16.54 5.31 0.09 -13.20 16 16 C -0.02 -0.44 6.71 -82.76 -0.56 -1.00 16 17 C -0.19 -3.23 10.81 -39.37 -0.43 -3.66 16 18 C -0.04 -0.53 12.02 -17.17 -0.21 -0.74 16 19 N -0.39 -6.35 6.83 30.47 0.21 -6.15 16 20 H 0.44 5.64 8.96 -190.44 -1.71 3.93 16 21 N -0.18 -3.86 7.84 33.42 0.26 -3.60 16 22 H 0.09 1.14 8.06 -52.49 -0.42 0.71 16 23 H 0.10 1.39 7.84 -52.48 -0.41 0.97 16 24 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 25 H 0.08 1.52 7.10 -51.93 -0.37 1.15 16 26 H 0.09 1.63 8.08 -51.93 -0.42 1.21 16 27 H 0.05 1.24 4.93 -51.93 -0.26 0.98 16 28 H 0.02 0.53 7.47 -51.93 -0.39 0.15 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 31 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 273.63 15.07 4.12 4.12 Total: -1.00 -33.13 273.63 -6.14 -39.27 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.83 Total: 4.12 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.66 Total: -1.30 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.81 Total: -48.81 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.13 -6.14 -39.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293998286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.913 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds