Wall clock time and date at job start Sun Mar 29 2020 21:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99849 * 2 1 4 4 N 1.46500 * 109.47198 * 125.00568 * 3 2 1 5 5 C 1.46498 * 119.99753 * 88.36579 * 4 3 2 6 6 C 1.50695 * 109.47339 * 94.58520 * 5 4 3 7 7 H 1.08006 * 119.99837 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00422 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00325 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99795 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46938 * 90.00196 * 10 8 6 12 12 H 1.48499 * 109.46974 * 209.99731 * 10 8 6 13 13 H 1.48490 * 109.47007 * 330.00392 * 10 8 6 14 14 C 1.34776 * 120.00050 * 268.36804 * 4 3 2 15 15 O 1.21566 * 119.99625 * 5.21721 * 14 4 3 16 16 C 1.47711 * 120.00116 * 185.21638 * 14 4 3 17 17 C 1.41496 * 126.51943 * 185.81180 * 16 14 4 18 18 C 1.35365 * 105.50460 * 179.90598 * 17 16 14 19 19 N 1.35033 * 107.22527 * 0.36099 * 18 17 16 20 20 H 0.97005 * 124.88500 * 179.76763 * 19 18 17 21 21 N 1.28461 * 110.23573 * 359.76350 * 19 18 17 22 22 H 1.07996 * 119.99918 * 179.97438 * 1 2 3 23 23 H 1.08003 * 120.00096 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.00385 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47106 * 5.00730 * 3 2 1 26 26 H 1.09003 * 109.47122 * 245.00769 * 3 2 1 27 27 H 1.09006 * 109.47174 * 214.57860 * 5 4 3 28 28 H 1.08998 * 109.47493 * 334.57879 * 5 4 3 29 29 H 0.96999 * 120.00532 * 179.97438 * 9 8 6 30 30 H 1.07998 * 127.24962 * 0.02926 * 17 16 14 31 31 H 1.07998 * 126.38583 * 180.16040 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3475 0.7929 0.9793 6 6 5.2960 1.9093 0.6256 7 1 4.9271 2.9193 0.5237 8 6 6.6345 1.6414 0.4319 9 7 7.4621 2.6156 0.1227 10 14 7.2726 -0.1053 0.6088 11 1 7.1996 -0.7943 -0.7047 12 1 8.6828 -0.0725 1.0728 13 1 6.4425 -0.8376 1.5986 14 6 2.6043 1.8524 2.3120 15 8 1.4537 2.2125 2.4674 16 6 3.5755 1.9851 3.4170 17 6 3.2942 2.4012 4.7398 18 6 4.4810 2.3674 5.3899 19 7 5.4128 1.9627 4.5003 20 1 6.3564 1.8526 4.6966 21 7 4.8700 1.7442 3.3567 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3585 2.1316 0.0897 26 1 2.6212 1.4027 -0.9315 27 1 4.6623 0.3318 1.9156 28 1 4.3541 0.0455 0.1860 29 1 8.4039 2.4273 -0.0132 30 1 2.3343 2.6841 5.1459 31 1 4.6515 2.6205 6.4259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293998286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:18 Heat of formation + Delta-G solvation = 55.443687 kcal Electronic energy + Delta-G solvation = -16667.471566 eV Core-core repulsion = 13951.163051 eV Total energy + Delta-G solvation = -2716.308515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.37314 -40.47013 -37.11805 -35.10249 -33.98628 -32.50442 -31.43251 -29.85291 -27.55357 -24.82624 -23.72976 -22.41486 -20.88469 -19.98163 -19.06550 -18.95558 -17.80338 -17.12397 -16.60802 -16.08729 -15.71115 -15.16608 -14.97264 -14.52494 -14.38129 -14.17088 -13.91328 -13.64366 -13.11788 -12.70397 -12.44959 -12.17276 -11.92130 -11.65119 -11.29093 -11.10361 -10.68908 -10.31700 -10.23653 -9.95398 -9.43501 -8.17760 -6.17500 0.79357 1.29544 1.38746 1.41055 1.41650 1.52820 2.16728 2.41957 2.52822 2.57430 3.18646 3.64627 4.01590 4.12794 4.22383 4.36188 4.55577 4.72988 4.79016 4.89030 4.90415 4.99609 5.10802 5.50059 5.57180 5.68241 5.72777 5.87943 6.26514 6.37839 6.59970 6.77597 7.08148 7.33964 7.43972 8.99736 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.012617 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.215554 B = 2218.781794 C = 3404.948074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.183 4.183 3 C 0.139 3.861 4 N -0.585 5.585 5 C 0.219 3.781 6 C -0.491 4.491 7 H 0.019 0.981 8 C 0.027 3.973 9 N -0.951 5.951 10 Si 0.936 3.064 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.246 1.246 14 C 0.593 3.407 15 O -0.583 6.583 16 C -0.055 4.055 17 C -0.210 4.210 18 C 0.003 3.997 19 N -0.384 5.384 20 H 0.455 0.545 21 N -0.230 5.230 22 H 0.121 0.879 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.263 0.737 30 H 0.166 0.834 31 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 -6.120 8.581 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C 0.017 3.983 4 N -0.313 5.313 5 C 0.097 3.903 6 C -0.530 4.530 7 H 0.037 0.963 8 C -0.170 4.170 9 N -0.593 5.593 10 Si 0.760 3.240 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.170 1.170 14 C 0.381 3.619 15 O -0.464 6.464 16 C -0.215 4.215 17 C -0.238 4.238 18 C -0.140 4.140 19 N -0.100 5.100 20 H 0.302 0.698 21 N -0.067 5.067 22 H 0.139 0.861 23 H 0.115 0.885 24 H 0.132 0.868 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.183 0.817 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -5.180 -6.244 7.856 11.293 hybrid contribution 0.589 0.056 0.303 0.665 sum -4.591 -6.188 8.158 11.222 Atomic orbital electron populations 1.23993 0.95159 1.02801 0.98045 1.23230 0.96818 0.97991 1.02132 1.20605 0.92000 0.96635 0.89013 1.47882 1.14740 1.58297 1.10403 1.19810 0.78328 0.94051 0.98121 1.21125 0.92842 0.93671 1.45341 0.96287 1.25483 0.96487 1.00778 0.94289 1.70061 1.04322 1.34254 1.50672 0.85894 0.77862 0.80659 0.79559 1.19594 1.21002 1.17006 1.17334 0.85825 0.76757 0.81950 1.90631 1.19451 1.53383 1.82899 1.21993 0.91319 1.11624 0.96542 1.21979 1.00860 1.09098 0.91870 1.23545 0.87498 1.03865 0.99122 1.43853 1.12351 1.47728 1.06113 0.69834 1.74388 1.08949 1.17504 1.05871 0.86061 0.88543 0.86815 0.90876 0.89572 0.92684 0.94597 0.92786 0.81675 0.75013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 14.32 67.78 0.97 -3.42 16 2 C -0.18 -5.82 9.85 25.65 0.25 -5.57 16 3 C 0.14 5.37 5.80 85.63 0.50 5.86 16 4 N -0.58 -26.27 2.45 -834.08 -2.04 -28.31 16 5 C 0.22 10.32 3.82 85.63 0.33 10.64 16 6 C -0.49 -27.32 8.37 25.60 0.21 -27.10 16 7 H 0.02 1.23 8.06 -2.91 -0.02 1.20 16 8 C 0.03 1.47 5.47 84.66 0.46 1.94 16 9 N -0.95 -57.52 13.96 21.45 0.30 -57.22 16 10 Si 0.94 41.79 27.47 68.60 1.88 43.68 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.25 -10.23 6.54 99.48 0.65 -9.58 16 14 C 0.59 27.49 7.63 86.75 0.66 28.15 16 15 O -0.58 -27.99 16.54 -3.92 -0.06 -28.06 16 16 C -0.06 -2.34 6.71 42.45 0.29 -2.06 16 17 C -0.21 -6.90 10.81 22.41 0.24 -6.66 16 18 C 0.00 0.08 12.02 83.54 1.00 1.08 16 19 N -0.38 -11.61 6.83 -57.51 -0.39 -12.01 16 20 H 0.46 10.51 8.96 -219.99 -1.97 8.54 16 21 N -0.23 -9.62 7.84 -48.18 -0.38 -9.99 16 22 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 23 H 0.10 2.62 7.84 -2.91 -0.02 2.60 16 24 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 25 H 0.07 2.86 7.10 -2.39 -0.02 2.84 16 26 H 0.09 3.26 8.08 -2.39 -0.02 3.24 16 27 H 0.06 2.61 4.93 -2.38 -0.01 2.60 16 28 H 0.04 1.60 7.47 -2.39 -0.02 1.58 16 29 H 0.26 14.91 8.31 -92.71 -0.77 14.13 16 30 H 0.17 4.88 8.06 -2.91 -0.02 4.85 16 31 H 0.23 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -74.41 273.63 3.34 -71.07 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.88 Total: 17.97 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 4.92 Total: 2.86 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -2.51 Total: -107.53 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.88 Total: 43.68 kcal Total: -74.41 3.34 -71.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293998286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.518 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds