Wall clock time and date at job start Sun Mar 29 2020 22:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36916 * 120.00407 * 2 1 4 4 H 1.07997 * 120.00252 * 143.06062 * 3 2 1 5 5 C 1.39016 * 119.99796 * 323.05590 * 3 2 1 6 6 N 1.31389 * 119.99986 * 358.09376 * 5 3 2 7 7 Si 1.86803 * 120.00183 * 178.09358 * 5 3 2 8 8 H 1.48503 * 109.46937 * 59.99993 * 7 5 3 9 9 H 1.48498 * 109.47327 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46878 * 300.00445 * 7 5 3 11 11 C 1.34780 * 119.99867 * 180.02562 * 2 1 3 12 12 O 1.21609 * 120.00011 * 184.57794 * 11 2 1 13 13 C 1.47605 * 119.99957 * 4.57698 * 11 2 1 14 14 C 1.41550 * 126.52549 * 174.89579 * 13 11 2 15 15 C 1.35340 * 105.50453 * 180.02562 * 14 13 11 16 16 C 1.50703 * 126.38210 * 179.97438 * 15 14 13 17 17 C 1.53003 * 117.52031 * 146.28203 * 16 15 14 18 18 C 1.52994 * 117.50118 * 214.91290 * 16 15 14 19 19 N 1.35052 * 107.24320 * 0.23895 * 15 14 13 20 20 H 0.96996 * 124.88023 * 179.71735 * 19 15 14 21 21 N 1.28474 * 110.23894 * 359.58958 * 19 15 14 22 22 H 1.09006 * 109.46872 * 236.70358 * 1 2 3 23 23 H 1.08998 * 109.46975 * 356.69275 * 1 2 3 24 24 H 1.08995 * 109.47722 * 116.69716 * 1 2 3 25 25 H 0.97000 * 120.00041 * 179.97438 * 6 5 3 26 26 H 1.07999 * 127.24267 * 0.02562 * 14 13 11 27 27 H 1.09000 * 115.54434 * 0.58510 * 16 15 14 28 28 H 1.08992 * 117.49958 * 214.97545 * 17 16 15 29 29 H 1.08996 * 117.49403 * 359.97438 * 17 16 15 30 30 H 1.08999 * 117.49627 * 359.97438 * 18 16 15 31 31 H 1.09004 * 117.49775 * 144.97193 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.0670 1.2795 0.5621 5 6 1.6639 2.2687 -0.7236 6 7 0.5680 2.1435 -1.4375 7 14 2.5692 3.9022 -0.6809 8 1 3.9496 3.7166 -1.1961 9 1 1.8522 4.8879 -1.5291 10 1 2.6253 4.4006 0.7167 11 6 2.1388 -1.1672 -0.0005 12 8 3.3520 -1.1690 0.0835 13 6 1.4043 -2.4434 -0.1031 14 6 1.9716 -3.7352 -0.2176 15 6 0.9219 -4.5870 -0.2821 16 6 0.9942 -6.0868 -0.4110 17 6 -0.0932 -6.9093 0.2833 18 6 -0.0896 -6.7776 -1.2410 19 7 -0.2027 -3.8422 -0.2153 20 1 -1.1052 -4.1965 -0.2437 21 7 0.0946 -2.5971 -0.1061 22 1 -0.3633 -0.5642 0.8590 23 1 -0.3633 1.0259 0.0593 24 1 -0.3634 -0.4617 -0.9180 25 1 0.2289 2.8993 -1.9422 26 1 3.0212 -3.9878 -0.2472 27 1 1.9991 -6.5076 -0.4450 28 1 0.1963 -7.8713 0.7060 29 1 -0.8609 -6.3657 0.8338 30 1 -0.8552 -6.1474 -1.6935 31 1 0.2024 -7.6528 -1.8214 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299511183.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:32 Heat of formation + Delta-G solvation = 54.952259 kcal Electronic energy + Delta-G solvation = -16170.449747 eV Core-core repulsion = 13454.119922 eV Total energy + Delta-G solvation = -2716.329825 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.62351 -40.07223 -38.01415 -36.69357 -33.80706 -32.63733 -31.42291 -28.22559 -26.87072 -24.63905 -23.83270 -23.24425 -21.95838 -20.25603 -18.88510 -18.68710 -17.56169 -16.85829 -16.59192 -16.34226 -15.85100 -15.46410 -14.98238 -14.56475 -14.24702 -13.73246 -13.40261 -13.08803 -13.04161 -12.75423 -12.47509 -12.42547 -12.11748 -11.97584 -11.63834 -11.34048 -10.92779 -10.70876 -10.28264 -9.68813 -9.53657 -8.35591 -6.13750 0.70623 1.10944 1.41260 1.48100 1.53889 2.01048 2.28457 2.55038 2.96942 3.03638 3.13317 3.52712 3.61999 3.82342 4.08929 4.19793 4.40129 4.70071 4.77498 4.83650 4.89009 5.00100 5.02910 5.19193 5.22373 5.32466 5.40420 5.43794 6.11257 6.22503 6.48963 6.94931 7.11590 7.35364 7.96612 8.67213 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.062025 B = 0.005637 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.323574 B = 4966.081020 C = 5242.560151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.443 5.443 3 C -0.349 4.349 4 H 0.073 0.927 5 C 0.000 4.000 6 N -0.895 5.895 7 Si 0.999 3.001 8 H -0.275 1.275 9 H -0.267 1.267 10 H -0.261 1.261 11 C 0.513 3.487 12 O -0.622 6.622 13 C -0.014 4.014 14 C -0.209 4.209 15 C 0.068 3.932 16 C -0.106 4.106 17 C -0.160 4.160 18 C -0.163 4.163 19 N -0.374 5.374 20 H 0.455 0.545 21 N -0.271 5.271 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.040 0.960 25 H 0.276 0.724 26 H 0.156 0.844 27 H 0.142 0.858 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 -16.083 0.857 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.160 5.160 3 C -0.477 4.477 4 H 0.091 0.909 5 C -0.202 4.202 6 N -0.533 5.533 7 Si 0.821 3.179 8 H -0.201 1.201 9 H -0.191 1.191 10 H -0.186 1.186 11 C 0.301 3.699 12 O -0.509 6.509 13 C -0.174 4.174 14 C -0.237 4.237 15 C -0.059 4.059 16 C -0.125 4.125 17 C -0.197 4.197 18 C -0.200 4.200 19 N -0.090 5.090 20 H 0.302 0.698 21 N -0.108 5.108 22 H 0.063 0.937 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.174 0.826 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.057 -15.281 0.841 16.853 hybrid contribution 0.750 0.442 -0.165 0.886 sum -6.307 -14.839 0.676 16.138 Atomic orbital electron populations 1.21458 0.79269 1.01867 0.98768 1.43606 1.06918 1.04199 1.61324 1.19617 1.08824 0.88851 1.30388 0.90878 1.26377 0.96995 1.03468 0.93398 1.69977 1.21547 1.33399 1.28361 0.84934 0.77937 0.75989 0.79052 1.20053 1.19122 1.18601 1.17666 0.86287 0.83179 0.82755 1.90534 1.14872 1.87454 1.57993 1.22013 0.90311 0.95411 1.09681 1.21522 1.00698 0.89970 1.11489 1.20758 0.85639 0.94700 1.04783 1.20636 0.98935 0.83838 1.09130 1.23207 0.99356 1.01962 0.95177 1.23209 0.99502 1.02962 0.94346 1.43340 1.09860 1.02879 1.52875 0.69780 1.73873 1.15982 1.00405 1.20489 0.93704 0.90589 0.94107 0.91396 0.82626 0.84051 0.85767 0.88559 0.88723 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.63 7.81 127.77 1.00 7.63 16 2 N -0.44 -25.87 2.97 -662.46 -1.96 -27.84 16 3 C -0.35 -21.20 9.01 84.09 0.76 -20.44 16 4 H 0.07 4.61 7.63 -2.91 -0.02 4.59 16 5 C 0.00 -0.01 5.19 84.95 0.44 0.43 16 6 N -0.90 -50.21 10.89 21.68 0.24 -49.97 16 7 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 8 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 9 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 C 0.51 29.52 7.62 86.72 0.66 30.18 16 12 O -0.62 -39.39 16.77 -4.06 -0.07 -39.46 16 13 C -0.01 -0.67 6.89 42.43 0.29 -0.38 16 14 C -0.21 -7.94 10.73 22.42 0.24 -7.70 16 15 C 0.07 1.89 6.64 41.40 0.28 2.17 16 16 C -0.11 -1.84 6.26 -11.54 -0.07 -1.92 16 17 C -0.16 -1.85 10.22 30.59 0.31 -1.53 16 18 C -0.16 -1.95 10.22 30.59 0.31 -1.63 16 19 N -0.37 -10.57 6.80 -47.93 -0.33 -10.90 16 20 H 0.45 8.67 8.96 -219.99 -1.97 6.70 16 21 N -0.27 -10.75 8.89 -48.20 -0.43 -11.18 16 22 H 0.04 2.09 7.24 -2.38 -0.02 2.07 16 23 H 0.08 4.06 5.99 -2.39 -0.01 4.05 16 24 H 0.04 2.08 7.37 -2.39 -0.02 2.06 16 25 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.16 5.73 8.06 -2.91 -0.02 5.71 16 27 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -76.40 272.04 2.88 -73.52 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -0.81 Total: 13.08 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.22 Total: 6.80 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -2.48 Total: -99.89 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.07 Total: -39.46 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -76.40 2.88 -73.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299511183.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.468 kcal (2) G-P(sol) polarization free energy of solvation -76.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds