Wall clock time and date at job start Sun Mar 29 2020 22:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99973 * 2 1 4 4 O 1.21508 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.48184 * 119.99850 * 180.02562 * 3 2 1 6 6 C 1.39027 * 119.68943 * 179.97438 * 5 3 2 7 7 C 1.39458 * 118.95902 * 179.69919 * 6 5 3 8 8 N 1.39190 * 120.83294 * 180.25814 * 7 6 5 9 9 C 1.46494 * 119.99842 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47205 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99957 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00041 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00290 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99772 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47246 * 59.99922 * 14 12 10 16 16 H 1.48503 * 109.46868 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47182 * 299.99772 * 14 12 10 18 18 C 1.39419 * 118.33241 * 0.27676 * 7 6 5 19 19 C 1.38234 * 119.26426 * 359.97438 * 18 7 6 20 20 N 1.31649 * 120.99328 * 0.02562 * 19 18 7 21 21 H 1.08999 * 109.47700 * 59.99532 * 1 2 3 22 22 H 1.09001 * 109.47621 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47259 * 299.99848 * 1 2 3 24 24 H 0.96996 * 119.99863 * 180.02562 * 2 1 3 25 25 H 1.08002 * 120.52341 * 359.97438 * 6 5 3 26 26 H 0.96998 * 119.99702 * 359.97438 * 8 7 6 27 27 H 1.09004 * 109.47095 * 299.99319 * 9 8 7 28 28 H 1.09003 * 109.47779 * 59.99446 * 9 8 7 29 29 H 0.96999 * 120.00508 * 179.97438 * 13 12 10 30 30 H 1.08001 * 120.36826 * 179.97438 * 18 7 6 31 31 H 1.08001 * 119.50079 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5313 2.2195 0.0005 5 6 3.6207 1.1672 -0.0006 6 6 4.3093 2.3749 -0.0011 7 6 5.7038 2.3571 0.0048 8 7 6.4324 3.5431 0.0098 9 6 7.8967 3.5031 0.0154 10 6 8.4377 4.9096 0.0195 11 1 7.7586 5.7493 0.0177 12 6 9.7997 5.1244 0.0256 13 7 10.6267 4.1019 0.0283 14 14 10.4702 6.8679 0.0300 15 1 9.9892 7.5802 1.2410 16 1 11.9546 6.8273 0.0370 17 1 9.9998 7.5822 -1.1839 18 6 6.3497 1.1216 0.0050 19 6 5.5942 -0.0359 0.0000 20 7 4.2786 0.0132 -0.0054 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.9499 -0.8400 -0.0004 25 1 3.7728 3.3123 -0.0015 26 1 5.9704 4.3960 0.0089 27 1 8.2425 2.9779 0.9058 28 1 8.2495 2.9811 -0.8742 29 1 11.5848 4.2529 0.0322 30 1 7.4285 1.0695 0.0091 31 1 6.0906 -0.9951 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308956104.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:15 Heat of formation + Delta-G solvation = -8.326742 kcal Electronic energy + Delta-G solvation = -15482.295826 eV Core-core repulsion = 12763.222018 eV Total energy + Delta-G solvation = -2719.073808 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21794 -38.73680 -35.77601 -34.57326 -32.92815 -31.08851 -30.20340 -27.16251 -26.78089 -23.89010 -22.69664 -22.08347 -20.18730 -18.27660 -16.91047 -16.44257 -15.56353 -15.29714 -15.26808 -15.09994 -14.63012 -13.82187 -13.78185 -13.42868 -13.25186 -13.01753 -12.43079 -12.36974 -12.23903 -11.29246 -11.06247 -11.02723 -10.33177 -10.21588 -10.14312 -9.55404 -9.21458 -9.17506 -8.80001 -8.68553 -7.09771 -6.31216 -4.37500 1.09913 1.90513 3.04322 3.19134 3.21218 3.24031 3.26219 4.10682 4.33928 4.34345 4.45637 5.02834 5.06466 5.16024 5.39209 5.46710 5.60832 5.64170 5.85629 6.02799 6.20505 6.38314 6.53017 6.83390 7.04823 7.23763 7.47835 7.49232 7.79047 8.00247 8.13113 8.38923 8.41904 8.72468 9.29476 10.79191 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.055508 B = 0.004502 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.311083 B = 6217.484020 C = 6701.337481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.721 5.721 3 C 0.576 3.424 4 O -0.539 6.539 5 C 0.104 3.896 6 C -0.199 4.199 7 C 0.256 3.744 8 N -0.709 5.709 9 C 0.247 3.753 10 C -0.545 4.545 11 H 0.063 0.937 12 C 0.066 3.934 13 N -0.888 5.888 14 Si 0.906 3.094 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 C -0.234 4.234 19 C 0.134 3.866 20 N -0.525 5.525 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.413 0.587 25 H 0.137 0.863 26 H 0.397 0.603 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.268 0.732 30 H 0.139 0.861 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 -8.827 -0.041 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.373 5.373 3 C 0.362 3.638 4 O -0.415 6.415 5 C -0.032 4.032 6 C -0.227 4.227 7 C 0.137 3.863 8 N -0.331 5.331 9 C 0.126 3.874 10 C -0.583 4.583 11 H 0.082 0.918 12 C -0.138 4.138 13 N -0.525 5.525 14 Si 0.733 3.267 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.261 4.261 19 C -0.023 4.023 20 N -0.242 5.242 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.249 0.751 25 H 0.155 0.845 26 H 0.231 0.769 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.867 -8.854 -0.044 15.619 hybrid contribution 1.135 1.603 0.005 1.964 sum -11.731 -7.251 -0.039 13.792 Atomic orbital electron populations 1.21546 0.79744 1.02118 1.02257 1.45618 1.07339 1.09337 1.74979 1.18075 0.86338 0.83646 0.75782 1.90751 1.69283 1.31488 1.49959 1.20456 0.92867 0.89629 1.00290 1.21435 0.92519 0.99344 1.09425 1.18195 0.90389 0.88497 0.89214 1.45581 1.08611 1.03957 1.74937 1.19253 0.72751 0.98324 0.97054 1.21126 0.92134 0.91529 1.53484 0.91837 1.24921 0.96590 0.97916 0.94391 1.69918 1.03422 1.30388 1.48800 0.86430 0.77822 0.83610 0.78866 1.19971 1.20961 1.19966 1.21866 1.02024 0.91653 1.10556 1.22286 0.88613 0.97775 0.93672 1.67447 1.10502 1.27690 1.18556 0.92265 0.90661 0.92256 0.75128 0.84517 0.76856 0.95630 0.95641 0.92241 0.84275 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.70 59.85 0.64 1.44 16 2 N -0.72 -8.68 5.70 -67.93 -0.39 -9.07 16 3 C 0.58 9.18 7.81 -12.17 -0.10 9.09 16 4 O -0.54 -9.99 16.32 5.36 0.09 -9.90 16 5 C 0.10 1.74 6.74 -83.06 -0.56 1.18 16 6 C -0.20 -3.53 9.52 -38.83 -0.37 -3.90 16 7 C 0.26 4.79 6.69 -83.63 -0.56 4.23 16 8 N -0.71 -14.41 5.71 -59.66 -0.34 -14.75 16 9 C 0.25 5.94 4.70 -5.20 -0.02 5.92 16 10 C -0.54 -14.24 9.28 -34.44 -0.32 -14.56 16 11 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 12 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 14 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 C -0.23 -4.06 9.39 -39.14 -0.37 -4.43 16 19 C 0.13 2.00 11.17 -17.63 -0.20 1.81 16 20 N -0.52 -8.15 9.54 -9.89 -0.09 -8.25 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.41 4.33 8.16 -40.82 -0.33 4.00 16 25 H 0.14 2.37 7.64 -52.49 -0.40 1.96 16 26 H 0.40 7.58 8.35 -40.82 -0.34 7.24 16 27 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 28 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.14 2.45 6.88 -52.49 -0.36 2.09 16 31 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 278.27 15.07 4.19 4.19 Total: -1.00 -29.66 278.27 -6.27 -35.92 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.49 Total: 8.00 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.95 Total: 2.44 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.09 Total: -56.01 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.66 -6.27 -35.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308956104.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.594 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds