Wall clock time and date at job start Sun Mar 29 2020 22:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99973 * 2 1 4 4 O 1.21508 * 120.00040 * 0.02562 * 3 2 1 5 5 C 1.48184 * 119.99850 * 180.02562 * 3 2 1 6 6 C 1.39027 * 119.68943 * 179.97438 * 5 3 2 7 7 C 1.39458 * 118.95902 * 179.69919 * 6 5 3 8 8 N 1.39190 * 120.83294 * 180.25814 * 7 6 5 9 9 C 1.46494 * 119.99842 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47205 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99957 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00041 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00290 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99772 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47246 * 59.99922 * 14 12 10 16 16 H 1.48503 * 109.46868 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47182 * 299.99772 * 14 12 10 18 18 C 1.39419 * 118.33241 * 0.27676 * 7 6 5 19 19 C 1.38234 * 119.26426 * 359.97438 * 18 7 6 20 20 N 1.31649 * 120.99328 * 0.02562 * 19 18 7 21 21 H 1.08999 * 109.47700 * 59.99532 * 1 2 3 22 22 H 1.09001 * 109.47621 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47259 * 299.99848 * 1 2 3 24 24 H 0.96996 * 119.99863 * 180.02562 * 2 1 3 25 25 H 1.08002 * 120.52341 * 359.97438 * 6 5 3 26 26 H 0.96998 * 119.99702 * 359.97438 * 8 7 6 27 27 H 1.09004 * 109.47095 * 299.99319 * 9 8 7 28 28 H 1.09003 * 109.47779 * 59.99446 * 9 8 7 29 29 H 0.96999 * 120.00508 * 179.97438 * 13 12 10 30 30 H 1.08001 * 120.36826 * 179.97438 * 18 7 6 31 31 H 1.08001 * 119.50079 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5313 2.2195 0.0005 5 6 3.6207 1.1672 -0.0006 6 6 4.3093 2.3749 -0.0011 7 6 5.7038 2.3571 0.0048 8 7 6.4324 3.5431 0.0098 9 6 7.8967 3.5031 0.0154 10 6 8.4377 4.9096 0.0195 11 1 7.7586 5.7493 0.0177 12 6 9.7997 5.1244 0.0256 13 7 10.6267 4.1019 0.0283 14 14 10.4702 6.8679 0.0300 15 1 9.9892 7.5802 1.2410 16 1 11.9546 6.8273 0.0370 17 1 9.9998 7.5822 -1.1839 18 6 6.3497 1.1216 0.0050 19 6 5.5942 -0.0359 0.0000 20 7 4.2786 0.0132 -0.0054 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.9499 -0.8400 -0.0004 25 1 3.7728 3.3123 -0.0015 26 1 5.9704 4.3960 0.0089 27 1 8.2425 2.9779 0.9058 28 1 8.2495 2.9811 -0.8742 29 1 11.5848 4.2529 0.0322 30 1 7.4285 1.0695 0.0091 31 1 6.0906 -0.9951 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308956104.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:15 Heat of formation + Delta-G solvation = -30.341157 kcal Electronic energy + Delta-G solvation = -15483.250442 eV Core-core repulsion = 12763.222018 eV Total energy + Delta-G solvation = -2720.028425 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52813 -40.02492 -37.36267 -35.67851 -34.84107 -32.41234 -31.80097 -28.64358 -28.10140 -25.41330 -24.09845 -23.64244 -21.45202 -19.69842 -18.60805 -17.81645 -17.01193 -16.80237 -16.52291 -16.43171 -16.20796 -15.29644 -15.07222 -14.88611 -14.67162 -14.37938 -14.12459 -13.71398 -13.05819 -12.91678 -12.81868 -12.71505 -12.18993 -11.82628 -11.51525 -11.42628 -10.69304 -10.55925 -10.31817 -10.00900 -8.67712 -8.33577 -6.47049 -0.25133 0.53367 1.41378 1.43051 1.51302 1.76001 2.10547 2.32553 2.70057 2.99260 3.03073 3.27174 3.86741 4.05297 4.24050 4.38767 4.53904 4.64730 4.70448 4.84223 4.95374 4.98614 5.15159 5.24100 5.38143 5.46349 5.66242 5.83474 6.28891 6.40695 6.61899 6.90925 6.93780 7.15958 7.25099 8.77519 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.055508 B = 0.004502 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.311083 B = 6217.484020 C = 6701.337481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.704 5.704 3 C 0.570 3.430 4 O -0.572 6.572 5 C 0.101 3.899 6 C -0.205 4.205 7 C 0.239 3.761 8 N -0.717 5.717 9 C 0.267 3.733 10 C -0.563 4.563 11 H 0.069 0.931 12 C 0.015 3.985 13 N -0.921 5.921 14 Si 0.974 3.026 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.245 4.245 19 C 0.146 3.854 20 N -0.510 5.510 21 H 0.055 0.945 22 H 0.116 0.884 23 H 0.055 0.945 24 H 0.422 0.578 25 H 0.135 0.865 26 H 0.401 0.599 27 H 0.004 0.996 28 H 0.004 0.996 29 H 0.270 0.730 30 H 0.131 0.869 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.317 -9.724 -0.044 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.355 5.355 3 C 0.356 3.644 4 O -0.451 6.451 5 C -0.036 4.036 6 C -0.233 4.233 7 C 0.122 3.878 8 N -0.341 5.341 9 C 0.145 3.855 10 C -0.601 4.601 11 H 0.087 0.913 12 C -0.186 4.186 13 N -0.560 5.560 14 Si 0.798 3.202 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.271 4.271 19 C -0.011 4.011 20 N -0.227 5.227 21 H 0.074 0.926 22 H 0.134 0.866 23 H 0.074 0.926 24 H 0.260 0.740 25 H 0.153 0.847 26 H 0.236 0.764 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.866 -9.812 -0.047 16.987 hybrid contribution 1.323 1.716 0.005 2.167 sum -12.542 -8.096 -0.042 14.929 Atomic orbital electron populations 1.21810 0.77660 1.04753 1.01901 1.45617 1.08686 1.08435 1.72738 1.18030 0.85985 0.84327 0.76106 1.90736 1.69639 1.32793 1.51917 1.20715 0.93740 0.89563 0.99610 1.21457 0.92035 0.99998 1.09802 1.18396 0.90856 0.88374 0.90132 1.45242 1.07100 1.04895 1.76830 1.18747 0.74861 0.97009 0.94890 1.21529 0.92734 0.92566 1.53304 0.91265 1.25825 0.96912 1.02024 0.93850 1.70031 1.03747 1.32537 1.49658 0.85363 0.77124 0.78589 0.79135 1.19274 1.20544 1.19263 1.22013 1.01965 0.92144 1.10974 1.22893 0.88237 0.98586 0.91414 1.67576 1.10624 1.26820 1.17664 0.92620 0.86561 0.92612 0.74017 0.84703 0.76411 0.97855 0.97865 0.92058 0.85076 0.78652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.70 127.77 1.37 2.65 16 2 N -0.70 -15.28 5.70 -487.14 -2.78 -18.06 16 3 C 0.57 17.49 7.81 86.89 0.68 18.17 16 4 O -0.57 -20.98 16.32 -3.74 -0.06 -21.04 16 5 C 0.10 3.25 6.74 41.83 0.28 3.53 16 6 C -0.21 -7.27 9.52 22.75 0.22 -7.06 16 7 C 0.24 9.04 6.69 38.55 0.26 9.30 16 8 N -0.72 -29.96 5.71 -342.65 -1.96 -31.92 16 9 C 0.27 13.31 4.70 85.63 0.40 13.71 16 10 C -0.56 -29.92 9.28 25.60 0.24 -29.68 16 11 H 0.07 3.50 7.60 -2.91 -0.02 3.48 16 12 C 0.01 0.78 5.46 84.66 0.46 1.24 16 13 N -0.92 -51.97 13.29 21.45 0.28 -51.68 16 14 Si 0.97 41.70 29.54 68.60 2.03 43.72 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 C -0.24 -8.40 9.39 22.55 0.21 -8.19 16 19 C 0.15 4.05 11.17 84.72 0.95 4.99 16 20 N -0.51 -14.69 9.54 -185.21 -1.77 -16.45 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.42 7.57 8.16 -92.71 -0.76 6.81 16 25 H 0.14 4.76 7.64 -2.91 -0.02 4.74 16 26 H 0.40 15.75 8.35 -92.71 -0.77 14.98 16 27 H 0.00 0.19 7.99 -2.38 -0.02 0.17 16 28 H 0.00 0.19 7.99 -2.39 -0.02 0.17 16 29 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.13 4.72 6.88 -2.91 -0.02 4.70 16 31 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -63.96 278.27 0.45 -63.52 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -0.36 Total: 23.24 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.06 Total: 8.67 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -6.22 Total: -118.11 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.04 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -63.96 0.45 -63.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308956104.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.177 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds