Wall clock time and date at job start Sun Mar 29 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46714 * 2 1 4 4 C 1.50697 * 109.46924 * 119.99905 * 2 1 3 5 5 N 1.32074 * 120.57156 * 305.46406 * 4 2 1 6 6 C 1.31912 * 121.01811 * 180.02562 * 5 4 2 7 7 N 1.31938 * 122.21826 * 0.02562 * 6 5 4 8 8 C 1.32048 * 121.01516 * 359.69680 * 7 6 5 9 9 C 1.40425 * 120.56901 * 125.49377 * 4 2 1 10 10 C 1.46983 * 120.98505 * 359.97438 * 9 4 2 11 11 O 1.35160 * 119.99901 * 56.41900 * 10 9 4 12 12 N 1.32518 * 119.99790 * 236.41571 * 10 9 4 13 13 C 1.32781 * 119.99828 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99791 * 359.97438 * 13 12 10 15 15 C 1.40527 * 119.99859 * 179.72481 * 13 12 10 16 16 N 1.30707 * 120.00194 * 0.27284 * 15 13 12 17 17 Si 1.86804 * 119.99786 * 180.27220 * 15 13 12 18 18 H 1.48504 * 109.46764 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46869 * 119.99950 * 17 15 13 20 20 H 1.48490 * 109.47221 * 240.00075 * 17 15 13 21 21 H 1.08998 * 109.46839 * 299.99881 * 1 2 3 22 22 H 1.08999 * 109.47259 * 60.00302 * 1 2 3 23 23 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46839 * 240.00119 * 2 1 3 25 25 H 1.09002 * 109.46789 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47496 * 299.99639 * 3 2 1 27 27 H 1.08998 * 109.47371 * 60.00445 * 3 2 1 28 28 H 1.08001 * 118.88873 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.57195 * 180.29887 * 8 7 6 30 30 H 0.96695 * 114.00283 * 359.97438 * 11 10 9 31 31 H 0.97000 * 119.99903 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.6342 -0.3349 2.4325 6 6 2.0686 -0.9501 3.5155 7 7 2.9143 -1.9612 3.4586 8 6 3.3625 -2.4091 2.3001 9 6 2.9322 -1.7826 1.1188 10 6 3.4059 -2.2391 -0.1956 11 8 4.0136 -1.3704 -1.0340 12 7 3.2372 -3.5024 -0.5585 13 6 3.6656 -3.9150 -1.7457 14 1 4.1511 -3.2209 -2.4156 15 6 3.4919 -5.2560 -2.1282 16 7 2.9039 -6.0959 -1.3175 17 14 4.1013 -5.8381 -3.7953 18 1 4.7269 -4.7016 -4.5180 19 1 5.1047 -6.9166 -3.6065 20 1 2.9576 -6.3590 -4.5862 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.7209 -0.6143 4.4812 29 1 4.0509 -3.2403 2.2617 30 1 4.0907 -0.4730 -0.6824 31 1 2.7837 -7.0215 -1.5818 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330764169.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:06 Heat of formation + Delta-G solvation = -4.725531 kcal Electronic energy + Delta-G solvation = -16341.661831 eV Core-core repulsion = 13622.744183 eV Total energy + Delta-G solvation = -2718.917648 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26379 -37.05410 -35.43866 -34.21158 -32.32711 -31.78846 -30.56726 -26.83964 -25.70931 -24.14658 -23.51383 -20.25394 -19.92971 -17.82641 -16.91567 -16.27282 -15.96123 -15.66860 -14.35466 -14.17463 -13.86271 -13.60270 -12.76122 -12.70981 -12.52170 -12.34838 -12.11245 -11.87440 -11.79833 -11.50192 -11.08858 -10.95045 -10.69235 -10.48684 -9.99795 -9.85795 -9.83332 -8.85777 -8.52782 -8.21876 -7.85159 -7.14837 -4.31699 1.53806 1.80562 2.77250 2.92003 2.99733 3.63414 3.70047 4.46184 4.63444 4.89838 5.08748 5.27757 5.39375 5.45430 5.51999 5.76192 5.91118 5.93824 6.08497 6.14128 6.15485 6.20136 6.31401 6.56257 6.60547 6.76238 6.82148 7.16919 7.53273 7.75988 7.86564 8.47911 8.80821 9.30014 9.75584 10.39383 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.028892 B = 0.007476 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.907944 B = 3744.591355 C = 4236.509306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 C -0.136 4.136 4 C 0.151 3.849 5 N -0.513 5.513 6 C 0.240 3.760 7 N -0.523 5.523 8 C 0.140 3.860 9 C -0.066 4.066 10 C 0.000 4.000 11 O -0.514 6.514 12 N -0.316 5.316 13 C -0.241 4.241 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.742 5.742 17 Si 0.933 3.067 18 H -0.254 1.254 19 H -0.267 1.267 20 H -0.267 1.267 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.101 0.899 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.181 0.819 29 H 0.161 0.839 30 H 0.357 0.643 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 6.999 0.382 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.068 4.068 3 C -0.194 4.194 4 C 0.002 3.998 5 N -0.227 5.227 6 C -0.048 4.048 7 N -0.236 5.236 8 C -0.028 4.028 9 C -0.072 4.072 10 C -0.194 4.194 11 O -0.310 6.310 12 N -0.041 5.041 13 C -0.398 4.398 14 H 0.090 0.910 15 C -0.159 4.159 16 N -0.366 5.366 17 Si 0.755 3.245 18 H -0.177 1.177 19 H -0.192 1.192 20 H -0.192 1.192 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.119 0.881 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.197 0.803 29 H 0.179 0.821 30 H 0.204 0.796 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.863 5.997 1.360 6.425 hybrid contribution 0.842 0.262 -1.529 1.765 sum -1.021 6.259 -0.169 6.344 Atomic orbital electron populations 1.21690 0.94020 1.01873 1.01552 1.20151 0.96564 0.95561 0.94483 1.21769 1.00538 0.95195 1.01922 1.21829 0.91043 0.94031 0.92867 1.67874 1.25676 1.30239 0.98882 1.24468 0.93203 0.90311 0.96774 1.68167 1.12282 1.13287 1.29909 1.23495 0.95433 0.97513 0.86316 1.20190 0.96364 0.95935 0.94728 1.19614 1.20674 0.87775 0.91337 1.84783 1.79162 1.21447 1.45623 1.67931 1.10951 1.07813 1.17395 1.20461 1.27417 0.93830 0.98056 0.91026 1.26500 0.93384 0.96077 0.99917 1.69709 1.26291 1.05009 1.35544 0.85801 0.79364 0.79629 0.79681 1.17732 1.19212 1.19236 0.92045 0.92673 0.92894 0.88082 0.93139 0.92333 0.92135 0.80253 0.82142 0.79574 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.06 37.16 0.34 -1.75 16 2 C -0.05 -0.83 2.48 -91.77 -0.23 -1.05 16 3 C -0.14 -1.90 9.13 37.16 0.34 -1.56 16 4 C 0.15 2.96 5.47 -81.67 -0.45 2.51 16 5 N -0.51 -9.60 9.99 -10.35 -0.10 -9.70 16 6 C 0.24 4.31 12.27 -91.93 -1.13 3.19 16 7 N -0.52 -10.40 10.42 -14.11 -0.15 -10.55 16 8 C 0.14 3.00 11.11 -16.62 -0.18 2.81 16 9 C -0.07 -1.45 5.54 -104.69 -0.58 -2.03 16 10 C 0.00 0.00 6.35 -13.71 -0.09 -0.09 16 11 O -0.51 -11.74 11.28 -17.18 -0.19 -11.93 16 12 N -0.32 -8.78 9.98 -10.40 -0.10 -8.88 16 13 C -0.24 -6.54 9.59 -16.28 -0.16 -6.69 16 14 H 0.07 1.94 6.98 -52.49 -0.37 1.58 16 15 C 0.07 1.65 5.53 -17.17 -0.09 1.55 16 16 N -0.74 -19.01 13.59 55.58 0.76 -18.26 16 17 Si 0.93 17.93 29.57 -169.99 -5.03 12.90 16 18 H -0.25 -4.87 7.11 56.52 0.40 -4.46 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 20 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 21 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.10 1.93 5.79 -51.93 -0.30 1.63 16 25 H 0.05 0.68 7.58 -51.93 -0.39 0.28 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 29 H 0.16 3.41 8.06 -52.49 -0.42 2.99 16 30 H 0.36 6.63 7.42 45.56 0.34 6.97 16 31 H 0.29 6.43 8.29 -40.82 -0.34 6.09 16 LS Contribution 275.39 15.07 4.15 4.15 Total: -1.00 -29.62 275.39 -5.70 -35.32 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -2.81 Total: 10.06 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.23 Total: -3.12 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.40 Total: -47.39 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.19 Total: -11.93 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.62 -5.70 -35.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330764169.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.596 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds