Wall clock time and date at job start Sun Mar 29 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46714 * 2 1 4 4 C 1.50697 * 109.46924 * 119.99905 * 2 1 3 5 5 N 1.32074 * 120.57156 * 305.46406 * 4 2 1 6 6 C 1.31912 * 121.01811 * 180.02562 * 5 4 2 7 7 N 1.31938 * 122.21826 * 0.02562 * 6 5 4 8 8 C 1.32048 * 121.01516 * 359.69680 * 7 6 5 9 9 C 1.40425 * 120.56901 * 125.49377 * 4 2 1 10 10 C 1.46983 * 120.98505 * 359.97438 * 9 4 2 11 11 O 1.35160 * 119.99901 * 56.41900 * 10 9 4 12 12 N 1.32518 * 119.99790 * 236.41571 * 10 9 4 13 13 C 1.32781 * 119.99828 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99791 * 359.97438 * 13 12 10 15 15 C 1.40527 * 119.99859 * 179.72481 * 13 12 10 16 16 N 1.30707 * 120.00194 * 0.27284 * 15 13 12 17 17 Si 1.86804 * 119.99786 * 180.27220 * 15 13 12 18 18 H 1.48504 * 109.46764 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46869 * 119.99950 * 17 15 13 20 20 H 1.48490 * 109.47221 * 240.00075 * 17 15 13 21 21 H 1.08998 * 109.46839 * 299.99881 * 1 2 3 22 22 H 1.08999 * 109.47259 * 60.00302 * 1 2 3 23 23 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46839 * 240.00119 * 2 1 3 25 25 H 1.09002 * 109.46789 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47496 * 299.99639 * 3 2 1 27 27 H 1.08998 * 109.47371 * 60.00445 * 3 2 1 28 28 H 1.08001 * 118.88873 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.57195 * 180.29887 * 8 7 6 30 30 H 0.96695 * 114.00283 * 359.97438 * 11 10 9 31 31 H 0.97000 * 119.99903 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.6342 -0.3349 2.4325 6 6 2.0686 -0.9501 3.5155 7 7 2.9143 -1.9612 3.4586 8 6 3.3625 -2.4091 2.3001 9 6 2.9322 -1.7826 1.1188 10 6 3.4059 -2.2391 -0.1956 11 8 4.0136 -1.3704 -1.0340 12 7 3.2372 -3.5024 -0.5585 13 6 3.6656 -3.9150 -1.7457 14 1 4.1511 -3.2209 -2.4156 15 6 3.4919 -5.2560 -2.1282 16 7 2.9039 -6.0959 -1.3175 17 14 4.1013 -5.8381 -3.7953 18 1 4.7269 -4.7016 -4.5180 19 1 5.1047 -6.9166 -3.6065 20 1 2.9576 -6.3590 -4.5862 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.7209 -0.6143 4.4812 29 1 4.0509 -3.2403 2.2617 30 1 4.0907 -0.4730 -0.6824 31 1 2.7837 -7.0215 -1.5818 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330764169.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:06 Heat of formation + Delta-G solvation = -26.794090 kcal Electronic energy + Delta-G solvation = -16342.618795 eV Core-core repulsion = 13622.744183 eV Total energy + Delta-G solvation = -2719.874612 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88784 -38.89168 -36.91777 -36.03056 -34.00889 -33.53189 -32.22677 -28.02967 -27.52400 -25.72305 -25.19108 -21.79022 -21.65365 -19.72380 -18.51045 -18.03503 -17.65044 -17.35439 -15.96632 -15.63382 -15.43085 -14.93744 -14.36695 -14.30898 -14.11916 -14.06856 -13.89415 -13.51334 -13.08394 -13.01245 -12.39898 -12.23119 -12.16615 -11.92537 -11.71548 -11.47106 -11.36792 -10.59343 -10.16616 -10.01981 -9.82921 -8.92100 -6.26559 -0.07567 0.14981 1.20147 1.33895 1.52577 1.90805 2.12716 2.85511 3.14487 3.34514 3.41860 3.54173 3.68479 4.03775 4.22749 4.24404 4.32299 4.51873 4.71491 4.78506 4.82944 4.95484 4.97162 5.06363 5.17112 5.33881 5.40193 5.58409 5.69206 5.90582 6.10391 6.62460 7.20251 7.53652 8.00815 8.51630 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.028892 B = 0.007476 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.907944 B = 3744.591355 C = 4236.509306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C -0.128 4.128 4 C 0.169 3.831 5 N -0.512 5.512 6 C 0.259 3.741 7 N -0.532 5.532 8 C 0.140 3.860 9 C -0.101 4.101 10 C 0.021 3.979 11 O -0.522 6.522 12 N -0.362 5.362 13 C -0.295 4.295 14 H 0.057 0.943 15 C 0.027 3.973 16 N -0.793 5.793 17 Si 1.010 2.990 18 H -0.257 1.257 19 H -0.254 1.254 20 H -0.254 1.254 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.028 0.972 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.227 0.773 29 H 0.153 0.847 30 H 0.375 0.625 31 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 8.839 0.837 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.071 4.071 3 C -0.186 4.186 4 C 0.021 3.979 5 N -0.226 5.226 6 C -0.028 4.028 7 N -0.246 5.246 8 C -0.027 4.027 9 C -0.107 4.107 10 C -0.178 4.178 11 O -0.320 6.320 12 N -0.087 5.087 13 C -0.448 4.448 14 H 0.075 0.925 15 C -0.193 4.193 16 N -0.418 5.418 17 Si 0.827 3.173 18 H -0.181 1.181 19 H -0.178 1.178 20 H -0.178 1.178 21 H 0.089 0.911 22 H 0.100 0.900 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.243 0.757 29 H 0.170 0.830 30 H 0.225 0.775 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.483 7.819 1.806 8.400 hybrid contribution 0.953 0.017 -1.333 1.638 sum -1.530 7.837 0.473 7.999 Atomic orbital electron populations 1.21671 0.92704 1.00886 1.03362 1.20246 0.97599 0.97144 0.92118 1.21727 1.00709 0.92725 1.03432 1.22230 0.89230 0.92151 0.94336 1.68073 1.25589 1.30342 0.98577 1.25512 0.90588 0.88340 0.98373 1.68281 1.13184 1.14323 1.28785 1.23446 0.95298 0.97029 0.86916 1.20246 0.98718 0.97923 0.93790 1.19995 1.18372 0.87549 0.91925 1.84739 1.78980 1.22569 1.45715 1.67967 1.12952 1.09515 1.18280 1.20556 1.30723 0.95245 0.98269 0.92549 1.27494 0.92842 0.95152 1.03836 1.69728 1.28321 1.05859 1.37848 0.84731 0.79255 0.78987 0.74321 1.18085 1.17764 1.17768 0.91090 0.90045 0.95241 0.90481 0.92888 0.89927 0.91520 0.75652 0.83009 0.77511 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.06 71.98 0.65 -3.09 16 2 C -0.05 -1.67 2.48 -11.54 -0.03 -1.70 16 3 C -0.13 -3.16 9.13 71.98 0.66 -2.50 16 4 C 0.17 6.36 5.47 43.05 0.24 6.60 16 5 N -0.51 -17.58 9.99 -186.66 -1.86 -19.44 16 6 C 0.26 8.41 12.27 180.81 2.22 10.63 16 7 N -0.53 -20.15 10.42 -198.54 -2.07 -22.22 16 8 C 0.14 5.97 11.11 85.20 0.95 6.92 16 9 C -0.10 -4.44 5.54 -19.91 -0.11 -4.55 16 10 C 0.02 1.04 6.35 86.88 0.55 1.60 16 11 O -0.52 -24.33 11.28 -84.38 -0.95 -25.28 16 12 N -0.36 -21.07 9.98 -299.82 -2.99 -24.06 16 13 C -0.30 -16.86 9.59 85.11 0.82 -16.04 16 14 H 0.06 3.25 6.98 -2.91 -0.02 3.23 16 15 C 0.03 1.37 5.53 85.42 0.47 1.85 16 16 N -0.79 -42.37 13.59 21.94 0.30 -42.07 16 17 Si 1.01 37.73 29.57 68.60 2.03 39.76 16 18 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 19 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 20 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 21 H 0.07 1.93 7.98 -2.39 -0.02 1.91 16 22 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.08 2.91 5.79 -2.39 -0.01 2.89 16 25 H 0.05 1.27 7.58 -2.39 -0.02 1.25 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.23 5.16 8.06 -2.91 -0.02 5.14 16 29 H 0.15 6.66 8.06 -2.91 -0.02 6.64 16 30 H 0.38 13.84 7.42 -74.06 -0.55 13.29 16 31 H 0.30 13.83 8.29 -92.71 -0.77 13.06 16 Total: -1.00 -66.61 275.39 1.47 -65.14 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.61 Total: 28.45 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 6.41 Total: -0.29 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -6.63 Total: -107.79 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.95 Total: -25.28 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -66.61 1.47 -65.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330764169.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.347 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds