Wall clock time and date at job start Sun Mar 29 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35854 * 126.18058 * 2 1 4 4 N 1.30165 * 109.05698 * 180.02562 * 3 2 1 5 5 C 1.35755 * 108.98964 * 0.02562 * 4 3 2 6 6 C 1.47230 * 126.22484 * 180.02562 * 5 4 3 7 7 O 1.21655 * 119.99656 * 174.47625 * 6 5 4 8 8 N 1.34771 * 120.00103 * 354.19708 * 6 5 4 9 9 C 1.36946 * 120.00121 * 175.69454 * 8 6 5 10 10 H 1.08003 * 119.99773 * 224.31726 * 9 8 6 11 11 C 1.38986 * 120.00028 * 44.31591 * 9 8 6 12 12 N 1.31411 * 119.99806 * 22.85397 * 11 9 8 13 13 Si 1.86804 * 119.99901 * 202.85199 * 11 9 8 14 14 H 1.48496 * 109.47206 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.46885 * 120.00243 * 13 11 9 16 16 H 1.48498 * 109.46808 * 239.99910 * 13 11 9 17 17 C 1.46501 * 119.99993 * 355.69304 * 8 6 5 18 18 C 1.53004 * 117.50072 * 183.08652 * 17 8 6 19 19 C 1.53002 * 117.50024 * 114.42534 * 17 8 6 20 20 C 1.35936 * 126.18161 * 180.33606 * 2 1 3 21 21 H 1.09000 * 109.47067 * 89.97785 * 1 2 3 22 22 H 1.08999 * 109.46870 * 209.97097 * 1 2 3 23 23 H 1.08990 * 109.47072 * 329.97447 * 1 2 3 24 24 H 1.08006 * 125.47558 * 0.04100 * 3 2 1 25 25 H 0.97002 * 119.99496 * 184.94958 * 12 11 9 26 26 H 1.09005 * 115.55325 * 328.75704 * 17 8 6 27 27 H 1.09002 * 117.49849 * 359.97438 * 18 17 8 28 28 H 1.08998 * 117.50202 * 145.02264 * 18 17 8 29 29 H 1.08997 * 117.49891 * 214.98161 * 19 17 8 30 30 H 1.09003 * 117.49683 * 359.97340 * 19 17 8 31 31 H 1.08007 * 126.61726 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2670 1.0966 0.0000 4 7 3.5110 0.7133 -0.0006 5 6 3.5552 -0.6435 -0.0015 6 6 4.7706 -1.4744 -0.0018 7 8 4.6808 -2.6835 0.0987 8 7 5.9822 -0.8961 -0.1192 9 6 7.1164 -1.6586 -0.0310 10 1 7.9540 -1.3145 0.5574 11 6 7.1894 -2.8753 -0.6989 12 7 6.4181 -3.1015 -1.7385 13 14 8.3839 -4.1891 -0.1186 14 1 9.1328 -3.6902 1.0627 15 1 7.6305 -5.4136 0.2532 16 1 9.3382 -4.5076 -1.2108 17 6 6.0861 0.5483 -0.3410 18 6 7.4858 1.1340 -0.5380 19 6 6.7256 1.3889 0.7660 20 6 2.2675 -1.0972 -0.0064 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5134 23 1 -0.3633 0.8897 0.5142 24 1 1.9271 2.1217 0.0006 25 1 6.4168 -3.9749 -2.1605 26 1 5.2687 0.9973 -0.9053 27 1 8.3294 0.4447 -0.5021 28 1 7.5892 1.9684 -1.2315 29 1 6.3291 2.3909 0.9297 30 1 7.0686 0.8673 1.6595 31 1 1.9481 -2.1289 -0.0121 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331476531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:08 Heat of formation + Delta-G solvation = 81.156341 kcal Electronic energy + Delta-G solvation = -16712.898936 eV Core-core repulsion = 13997.705405 eV Total energy + Delta-G solvation = -2715.193531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.50510 -38.07541 -35.72805 -33.69608 -32.63176 -30.68665 -29.07472 -27.11627 -24.90670 -22.28178 -21.35524 -20.77266 -20.45583 -19.09611 -17.21641 -15.84395 -15.57976 -15.40018 -14.58223 -14.22682 -13.78299 -13.64807 -13.18823 -13.04537 -12.73792 -12.52625 -12.28129 -11.64115 -11.06060 -10.74904 -10.65675 -10.49970 -10.11520 -9.81361 -9.67158 -9.28298 -8.97883 -8.59322 -7.99747 -7.93079 -6.89281 -5.98139 -3.73154 2.32366 3.02853 3.21593 3.41383 3.49725 3.51408 4.41407 4.69780 4.78331 4.92168 5.06881 5.12895 5.17770 5.24192 5.30121 5.52195 5.89417 6.05411 6.08926 6.18559 6.45524 6.52939 6.54914 6.73620 7.01383 7.16344 7.28996 7.54054 7.75126 8.34336 8.47352 9.19236 9.33329 9.79776 10.45270 11.07315 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.028692 B = 0.009156 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.637189 B = 3057.249300 C = 3829.613043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.471 5.471 3 C 0.162 3.838 4 N -0.460 5.460 5 C -0.016 4.016 6 C 0.552 3.448 7 O -0.543 6.543 8 N -0.410 5.410 9 C -0.345 4.345 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.825 5.825 13 Si 0.903 3.097 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.287 1.287 17 C 0.097 3.903 18 C -0.189 4.189 19 C -0.199 4.199 20 C -0.004 4.004 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.201 0.799 25 H 0.262 0.738 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 8.445 2.153 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.156 5.156 3 C -0.120 4.120 4 N -0.180 5.180 5 C -0.145 4.145 6 C 0.339 3.661 7 O -0.422 6.422 8 N -0.128 5.128 9 C -0.472 4.472 10 H 0.097 0.903 11 C -0.134 4.134 12 N -0.458 5.458 13 Si 0.730 3.270 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.213 1.213 17 C -0.009 4.009 18 C -0.227 4.227 19 C -0.238 4.238 20 C -0.139 4.139 21 H 0.091 0.909 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.218 0.782 25 H 0.073 0.927 26 H 0.145 0.855 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.881 8.199 2.014 12.997 hybrid contribution -0.357 -1.025 0.175 1.100 sum -10.239 7.173 2.189 12.692 Atomic orbital electron populations 1.21966 0.77158 1.04288 1.03240 1.45357 1.07315 1.07167 1.55750 1.25175 0.86049 0.93135 1.07668 1.70824 1.17882 1.11528 1.17740 1.21428 0.94397 0.89761 1.08939 1.16611 0.81344 0.86146 0.81997 1.90620 1.85360 1.13375 1.52858 1.42565 1.04628 1.03601 1.62023 1.18923 0.95068 1.02970 1.30256 0.90288 1.25177 0.96529 0.99166 0.92549 1.69957 1.37830 1.21997 1.16046 0.86309 0.80049 0.82024 0.78631 1.19552 1.20659 1.21342 1.21996 0.95341 0.83725 0.99863 1.23141 0.97782 1.02556 0.99195 1.23128 1.06408 1.00676 0.93614 1.22627 0.90464 0.92425 1.08387 0.90850 0.89879 0.89750 0.78228 0.92741 0.85527 0.88018 0.90183 0.90086 0.89878 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 11.16 59.85 0.67 1.28 16 2 N -0.47 -6.62 3.14 -125.58 -0.39 -7.02 16 3 C 0.16 2.41 12.55 -89.91 -1.13 1.28 16 4 N -0.46 -9.13 7.92 -11.04 -0.09 -9.22 16 5 C -0.02 -0.36 6.67 -83.10 -0.55 -0.91 16 6 C 0.55 15.48 7.08 -12.61 -0.09 15.39 16 7 O -0.54 -16.88 14.58 5.23 0.08 -16.80 16 8 N -0.41 -11.36 2.82 -109.00 -0.31 -11.67 16 9 C -0.35 -10.06 7.91 -14.99 -0.12 -10.18 16 10 H 0.08 2.23 7.28 -52.48 -0.38 1.85 16 11 C 0.08 2.26 4.22 -17.45 -0.07 2.19 16 12 N -0.83 -25.52 11.95 55.50 0.66 -24.86 16 13 Si 0.90 22.67 29.61 -169.99 -5.03 17.64 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.10 2.26 5.15 -67.93 -0.35 1.91 16 18 C -0.19 -3.93 9.80 -26.69 -0.26 -4.19 16 19 C -0.20 -4.02 10.36 -26.69 -0.28 -4.30 16 20 C 0.00 -0.07 11.30 -16.35 -0.18 -0.25 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.20 1.98 8.06 -52.48 -0.42 1.56 16 25 H 0.26 7.72 8.32 -40.82 -0.34 7.38 16 26 H 0.13 2.92 5.84 -51.93 -0.30 2.62 16 27 H 0.10 2.27 6.72 -51.93 -0.35 1.92 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.18 3.13 8.06 -52.48 -0.42 2.71 16 LS Contribution 270.69 15.07 4.08 4.08 Total: -1.00 -36.55 270.69 -6.93 -43.48 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.55 Total: 2.15 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.37 Total: 2.21 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.13 Total: -52.76 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.08 Total: -16.80 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -36.55 -6.93 -43.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331476531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.637 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds