Wall clock time and date at job start Sun Mar 29 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35854 * 126.18058 * 2 1 4 4 N 1.30165 * 109.05698 * 180.02562 * 3 2 1 5 5 C 1.35755 * 108.98964 * 0.02562 * 4 3 2 6 6 C 1.47230 * 126.22484 * 180.02562 * 5 4 3 7 7 O 1.21655 * 119.99656 * 174.47625 * 6 5 4 8 8 N 1.34771 * 120.00103 * 354.19708 * 6 5 4 9 9 C 1.36946 * 120.00121 * 175.69454 * 8 6 5 10 10 H 1.08003 * 119.99773 * 224.31726 * 9 8 6 11 11 C 1.38986 * 120.00028 * 44.31591 * 9 8 6 12 12 N 1.31411 * 119.99806 * 22.85397 * 11 9 8 13 13 Si 1.86804 * 119.99901 * 202.85199 * 11 9 8 14 14 H 1.48496 * 109.47206 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.46885 * 120.00243 * 13 11 9 16 16 H 1.48498 * 109.46808 * 239.99910 * 13 11 9 17 17 C 1.46501 * 119.99993 * 355.69304 * 8 6 5 18 18 C 1.53004 * 117.50072 * 183.08652 * 17 8 6 19 19 C 1.53002 * 117.50024 * 114.42534 * 17 8 6 20 20 C 1.35936 * 126.18161 * 180.33606 * 2 1 3 21 21 H 1.09000 * 109.47067 * 89.97785 * 1 2 3 22 22 H 1.08999 * 109.46870 * 209.97097 * 1 2 3 23 23 H 1.08990 * 109.47072 * 329.97447 * 1 2 3 24 24 H 1.08006 * 125.47558 * 0.04100 * 3 2 1 25 25 H 0.97002 * 119.99496 * 184.94958 * 12 11 9 26 26 H 1.09005 * 115.55325 * 328.75704 * 17 8 6 27 27 H 1.09002 * 117.49849 * 359.97438 * 18 17 8 28 28 H 1.08998 * 117.50202 * 145.02264 * 18 17 8 29 29 H 1.08997 * 117.49891 * 214.98161 * 19 17 8 30 30 H 1.09003 * 117.49683 * 359.97340 * 19 17 8 31 31 H 1.08007 * 126.61726 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2670 1.0966 0.0000 4 7 3.5110 0.7133 -0.0006 5 6 3.5552 -0.6435 -0.0015 6 6 4.7706 -1.4744 -0.0018 7 8 4.6808 -2.6835 0.0987 8 7 5.9822 -0.8961 -0.1192 9 6 7.1164 -1.6586 -0.0310 10 1 7.9540 -1.3145 0.5574 11 6 7.1894 -2.8753 -0.6989 12 7 6.4181 -3.1015 -1.7385 13 14 8.3839 -4.1891 -0.1186 14 1 9.1328 -3.6902 1.0627 15 1 7.6305 -5.4136 0.2532 16 1 9.3382 -4.5076 -1.2108 17 6 6.0861 0.5483 -0.3410 18 6 7.4858 1.1340 -0.5380 19 6 6.7256 1.3889 0.7660 20 6 2.2675 -1.0972 -0.0064 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8903 0.5134 23 1 -0.3633 0.8897 0.5142 24 1 1.9271 2.1217 0.0006 25 1 6.4168 -3.9749 -2.1605 26 1 5.2687 0.9973 -0.9053 27 1 8.3294 0.4447 -0.5021 28 1 7.5892 1.9684 -1.2315 29 1 6.3291 2.3909 0.9297 30 1 7.0686 0.8673 1.6595 31 1 1.9481 -2.1289 -0.0121 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331476531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:07 Heat of formation + Delta-G solvation = 56.999022 kcal Electronic energy + Delta-G solvation = -16713.946476 eV Core-core repulsion = 13997.705405 eV Total energy + Delta-G solvation = -2716.241070 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.83437 -40.01545 -37.63501 -34.94605 -34.66168 -32.73417 -30.51962 -28.30862 -26.75405 -24.01421 -22.99581 -22.39160 -21.88570 -20.87245 -18.78490 -17.77422 -17.15717 -16.62384 -16.56417 -15.95939 -15.43057 -15.07688 -14.80109 -14.63343 -14.32183 -13.66904 -13.54384 -13.33680 -13.01978 -12.75376 -12.69212 -12.20563 -12.06326 -11.58595 -11.35085 -10.77097 -10.65081 -10.42685 -10.00176 -9.44243 -8.98519 -8.16408 -5.97260 0.88093 1.37373 1.44260 1.53365 1.80555 1.95504 2.37122 2.91213 3.15801 3.22555 3.53277 3.76879 4.02188 4.10789 4.31671 4.37391 4.46492 4.52610 4.63767 4.78073 4.83108 4.93307 5.10795 5.19613 5.39728 5.48522 5.52690 5.71081 6.21113 6.38966 6.99674 7.05214 7.30128 7.71008 8.37615 8.88134 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.028692 B = 0.009156 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.637189 B = 3057.249300 C = 3829.613043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.458 5.458 3 C 0.187 3.813 4 N -0.493 5.493 5 C -0.068 4.068 6 C 0.536 3.464 7 O -0.595 6.595 8 N -0.428 5.428 9 C -0.361 4.361 10 H 0.078 0.922 11 C 0.025 3.975 12 N -0.866 5.866 13 Si 0.968 3.032 14 H -0.258 1.258 15 H -0.291 1.291 16 H -0.271 1.271 17 C 0.068 3.932 18 C -0.182 4.182 19 C -0.172 4.172 20 C 0.007 3.993 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.121 0.879 24 H 0.257 0.743 25 H 0.259 0.741 26 H 0.131 0.869 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.962 10.781 2.641 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.141 5.141 3 C -0.096 4.096 4 N -0.213 5.213 5 C -0.196 4.196 6 C 0.326 3.674 7 O -0.478 6.478 8 N -0.146 5.146 9 C -0.489 4.489 10 H 0.096 0.904 11 C -0.181 4.181 12 N -0.501 5.501 13 Si 0.792 3.208 14 H -0.182 1.182 15 H -0.217 1.217 16 H -0.197 1.197 17 C -0.037 4.037 18 C -0.219 4.219 19 C -0.211 4.211 20 C -0.132 4.132 21 H 0.109 0.891 22 H 0.111 0.889 23 H 0.139 0.861 24 H 0.273 0.727 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.446 10.588 2.506 15.792 hybrid contribution -0.053 -1.602 0.053 1.604 sum -11.498 8.986 2.559 14.816 Atomic orbital electron populations 1.22450 0.73028 1.06698 1.05135 1.45626 1.09516 1.05357 1.53592 1.26179 0.84664 0.95112 1.03659 1.70636 1.21022 1.09856 1.19789 1.20828 0.93646 0.91234 1.13921 1.17412 0.83021 0.86351 0.80631 1.90541 1.86563 1.15642 1.55096 1.42808 1.04336 1.05351 1.62078 1.19172 0.95753 1.03923 1.30007 0.90399 1.26080 0.98324 1.01224 0.92505 1.70058 1.40376 1.22143 1.17531 0.85320 0.78043 0.78580 0.78880 1.18222 1.21709 1.19682 1.22157 0.96934 0.81887 1.02712 1.23195 0.95608 1.02719 1.00424 1.23098 1.04473 1.01260 0.92257 1.22600 0.90035 0.93820 1.06731 0.89146 0.88914 0.86069 0.72729 0.93124 0.85172 0.90154 0.86879 0.86594 0.91429 0.80177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 11.16 127.77 1.43 2.19 16 2 N -0.46 -11.39 3.14 -551.24 -1.73 -13.12 16 3 C 0.19 4.85 12.55 180.10 2.26 7.11 16 4 N -0.49 -18.89 7.92 -188.83 -1.50 -20.38 16 5 C -0.07 -3.16 6.67 40.50 0.27 -2.89 16 6 C 0.54 31.44 7.08 86.61 0.61 32.06 16 7 O -0.60 -39.09 14.58 -4.21 -0.06 -39.15 16 8 N -0.43 -24.57 2.82 -616.99 -1.74 -26.31 16 9 C -0.36 -21.84 7.91 84.07 0.67 -21.17 16 10 H 0.08 4.55 7.28 -2.91 -0.02 4.53 16 11 C 0.03 1.54 4.22 84.94 0.36 1.90 16 12 N -0.87 -56.00 11.95 21.67 0.26 -55.75 16 13 Si 0.97 48.17 29.61 68.60 2.03 50.21 16 14 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 15 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 16 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 17 C 0.07 3.19 5.15 44.99 0.23 3.42 16 18 C -0.18 -7.42 9.80 30.62 0.30 -7.12 16 19 C -0.17 -6.73 10.36 30.62 0.32 -6.41 16 20 C 0.01 0.26 11.30 83.66 0.95 1.20 16 21 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.26 3.43 8.06 -2.91 -0.02 3.41 16 25 H 0.26 16.01 8.32 -92.71 -0.77 15.24 16 26 H 0.13 5.99 5.84 -2.38 -0.01 5.98 16 27 H 0.08 3.62 6.72 -2.39 -0.02 3.60 16 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.18 6.42 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -85.76 270.69 5.78 -79.97 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.14 Total: 14.23 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 7.39 Total: 10.30 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -4.71 Total: -115.56 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.06 Total: -39.15 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.21 kcal Total: -85.76 5.78 -79.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331476531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.972 kcal (2) G-P(sol) polarization free energy of solvation -85.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds