Wall clock time and date at job start Sun Mar 29 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28440 * 125.19711 * 2 1 4 4 C 1.30876 * 110.95500 * 180.31064 * 3 2 1 5 5 C 1.39656 * 107.87578 * 359.71639 * 4 3 2 6 6 C 1.36652 * 125.19341 * 179.82608 * 2 1 3 7 7 C 1.47016 * 126.89329 * 359.96641 * 6 2 1 8 8 O 1.21675 * 120.00747 * 353.14099 * 7 6 2 9 9 N 1.34780 * 119.99703 * 173.14506 * 7 6 2 10 10 C 1.36843 * 120.00039 * 177.90792 * 9 7 6 11 11 H 1.08000 * 119.99419 * 322.33372 * 10 9 7 12 12 C 1.39046 * 120.00209 * 142.33795 * 10 9 7 13 13 N 1.31369 * 120.00196 * 354.09245 * 12 10 9 14 14 Si 1.86795 * 120.00144 * 174.10013 * 12 10 9 15 15 H 1.48504 * 109.47229 * 269.99636 * 14 12 10 16 16 H 1.48503 * 109.47486 * 29.99628 * 14 12 10 17 17 H 1.48500 * 109.47493 * 149.99605 * 14 12 10 18 18 C 1.46496 * 120.00056 * 357.90142 * 9 7 6 19 19 C 1.53007 * 117.49719 * 159.40449 * 18 9 7 20 20 C 1.52999 * 117.49765 * 90.74745 * 18 9 7 21 21 H 1.08999 * 109.47121 * 266.91339 * 1 2 3 22 22 H 1.08998 * 109.46968 * 26.90939 * 1 2 3 23 23 H 1.08999 * 109.47583 * 146.91221 * 1 2 3 24 24 H 1.07997 * 126.06596 * 179.71638 * 4 3 2 25 25 H 1.08000 * 127.32183 * 179.97438 * 5 4 3 26 26 H 0.96998 * 119.99976 * 175.18662 * 13 12 10 27 27 H 1.09000 * 115.55550 * 305.07883 * 18 9 7 28 28 H 1.08996 * 117.49970 * 0.02562 * 19 18 9 29 29 H 1.09003 * 117.49249 * 145.02684 * 19 18 9 30 30 H 1.09000 * 117.50102 * 214.98152 * 20 18 9 31 31 H 1.09009 * 117.49985 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4738 0.7276 -0.0066 5 6 3.5623 -0.6661 -0.0048 6 6 2.2525 -1.1167 0.0034 7 6 1.8004 -2.5156 0.0083 8 8 0.6179 -2.7724 0.1356 9 7 2.6958 -3.5137 -0.1281 10 6 2.2805 -4.8167 -0.0806 11 1 1.4994 -5.1098 0.6054 12 6 2.8641 -5.7633 -0.9153 13 7 3.7301 -5.3884 -1.8292 14 14 2.4165 -7.5681 -0.7373 15 1 3.3405 -8.2143 0.2290 16 1 1.0213 -7.6858 -0.2426 17 1 2.5319 -8.2392 -2.0570 18 6 4.1136 -3.2036 -0.3273 19 6 5.1293 -4.3000 0.0006 20 6 4.9924 -3.0833 0.9194 21 1 -0.3633 -0.0553 1.0262 22 1 -0.3633 0.9164 -0.4651 23 1 -0.3634 -0.8610 -0.5610 24 1 4.3048 1.4173 -0.0125 25 1 4.4610 -1.2652 -0.0093 26 1 4.1894 -6.0544 -2.3643 27 1 4.3375 -2.5448 -1.1662 28 1 4.7426 -5.2520 0.3641 29 1 6.0216 -4.3619 -0.6225 30 1 5.7945 -2.3455 0.9005 31 1 4.5154 -3.2345 1.8879 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331503291.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:06 Heat of formation + Delta-G solvation = 99.070855 kcal Electronic energy + Delta-G solvation = -17000.260437 eV Core-core repulsion = 14285.843738 eV Total energy + Delta-G solvation = -2714.416699 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.84171 -38.62893 -36.31790 -32.97363 -32.77214 -31.46555 -30.00930 -26.58812 -25.33223 -22.54955 -21.78415 -21.10747 -20.53495 -18.94416 -17.04313 -16.43663 -15.66491 -15.46791 -15.08924 -14.24279 -14.09021 -13.64647 -13.23959 -12.89873 -12.81784 -12.33019 -11.98350 -11.74605 -11.34041 -11.21936 -10.73159 -10.55293 -10.37549 -10.27517 -9.84526 -9.22940 -8.80381 -8.63169 -8.57655 -8.29058 -7.60791 -6.37437 -4.09852 2.09191 3.05309 3.11991 3.20599 3.21620 3.26267 4.03825 4.21558 4.64304 4.79158 5.06948 5.12695 5.44162 5.59444 5.63419 5.83291 5.85244 5.97661 6.07004 6.13291 6.28293 6.36874 6.45283 6.78966 6.94298 7.12018 7.23347 7.34288 7.44032 8.08972 8.35007 8.65387 9.03185 9.22552 9.83483 10.62771 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034118 B = 0.009204 C = 0.007676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.479578 B = 3041.306966 C = 3646.642998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.273 5.273 3 N -0.305 5.305 4 C -0.015 4.015 5 C -0.223 4.223 6 C 0.001 3.999 7 C 0.520 3.480 8 O -0.585 6.585 9 N -0.391 5.391 10 C -0.310 4.310 11 H 0.094 0.906 12 C 0.042 3.958 13 N -0.855 5.855 14 Si 0.921 3.079 15 H -0.276 1.276 16 H -0.268 1.268 17 H -0.282 1.282 18 C 0.103 3.897 19 C -0.113 4.113 20 C -0.230 4.230 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.106 0.894 24 H 0.177 0.823 25 H 0.177 0.823 26 H 0.269 0.731 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 5.365 2.180 6.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.060 5.060 3 N -0.137 5.137 4 C -0.192 4.192 5 C -0.251 4.251 6 C -0.128 4.128 7 C 0.308 3.692 8 O -0.470 6.470 9 N -0.107 5.107 10 C -0.439 4.439 11 H 0.112 0.888 12 C -0.164 4.164 13 N -0.491 5.491 14 Si 0.748 3.252 15 H -0.202 1.202 16 H -0.192 1.192 17 H -0.207 1.207 18 C -0.002 4.002 19 C -0.151 4.151 20 C -0.269 4.269 21 H 0.095 0.905 22 H 0.101 0.899 23 H 0.124 0.876 24 H 0.194 0.806 25 H 0.194 0.806 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.271 6.037 2.029 6.494 hybrid contribution 0.531 -1.471 -0.046 1.565 sum 1.802 4.565 1.983 5.294 Atomic orbital electron populations 1.22120 0.73425 1.04720 1.04191 1.45463 1.07435 1.02106 1.51023 1.73023 1.04432 1.14297 1.21983 1.23459 0.93228 0.95381 1.07093 1.23164 0.97324 0.94967 1.09673 1.21962 0.90999 0.90490 1.09334 1.16901 0.85808 0.82256 0.84205 1.90614 1.16154 1.83940 1.56319 1.42616 1.03353 1.04722 1.60042 1.19467 1.22356 0.82151 1.19877 0.88818 1.25438 0.96654 1.00577 0.93763 1.69987 1.25299 1.34588 1.19193 0.85995 0.79527 0.81997 0.77723 1.20160 1.19199 1.20728 1.21360 0.81211 1.02170 0.95449 1.22794 0.98914 0.94030 0.99326 1.23699 1.03459 1.03268 0.96481 0.90490 0.89854 0.87586 0.80611 0.80638 0.92022 0.87580 0.88233 0.89987 0.89544 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.58 10.65 59.85 0.64 2.21 16 2 N -0.27 -5.41 3.75 -63.89 -0.24 -5.65 16 3 N -0.31 -5.74 11.90 30.59 0.36 -5.38 16 4 C -0.01 -0.25 12.03 -17.43 -0.21 -0.46 16 5 C -0.22 -4.22 8.93 -38.95 -0.35 -4.56 16 6 C 0.00 0.02 6.87 -82.06 -0.56 -0.55 16 7 C 0.52 13.11 7.60 -12.70 -0.10 13.01 16 8 O -0.58 -15.93 14.75 5.21 0.08 -15.85 16 9 N -0.39 -9.86 2.87 -109.09 -0.31 -10.17 16 10 C -0.31 -8.28 8.40 -15.02 -0.13 -8.41 16 11 H 0.09 2.61 7.71 -52.49 -0.40 2.20 16 12 C 0.04 1.06 3.78 -17.45 -0.07 0.99 16 13 N -0.86 -21.56 10.26 55.50 0.57 -20.99 16 14 Si 0.92 19.81 29.56 -169.99 -5.02 14.78 16 15 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 C 0.10 2.24 2.96 -67.93 -0.20 2.03 16 19 C -0.11 -2.28 7.65 -26.69 -0.20 -2.49 16 20 C -0.23 -4.18 8.83 -26.69 -0.24 -4.42 16 21 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.11 1.89 6.67 -51.93 -0.35 1.55 16 24 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 25 H 0.18 3.08 3.32 -52.49 -0.17 2.90 16 26 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 27 H 0.11 2.28 6.73 -51.93 -0.35 1.93 16 28 H 0.10 2.23 6.21 -51.93 -0.32 1.90 16 29 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.30 7.66 -51.93 -0.40 0.91 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 LS Contribution 259.35 15.07 3.91 3.91 Total: -1.00 -30.04 259.35 -5.32 -35.36 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -3.24 Total: 6.63 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.41 Total: -2.63 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.38 Total: -42.19 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.08 Total: -15.85 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.04 -5.32 -35.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331503291.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.428 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds