Wall clock time and date at job start Sun Mar 29 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28440 * 125.19711 * 2 1 4 4 C 1.30876 * 110.95500 * 180.31064 * 3 2 1 5 5 C 1.39656 * 107.87578 * 359.71639 * 4 3 2 6 6 C 1.36652 * 125.19341 * 179.82608 * 2 1 3 7 7 C 1.47016 * 126.89329 * 359.96641 * 6 2 1 8 8 O 1.21675 * 120.00747 * 353.14099 * 7 6 2 9 9 N 1.34780 * 119.99703 * 173.14506 * 7 6 2 10 10 C 1.36843 * 120.00039 * 177.90792 * 9 7 6 11 11 H 1.08000 * 119.99419 * 322.33372 * 10 9 7 12 12 C 1.39046 * 120.00209 * 142.33795 * 10 9 7 13 13 N 1.31369 * 120.00196 * 354.09245 * 12 10 9 14 14 Si 1.86795 * 120.00144 * 174.10013 * 12 10 9 15 15 H 1.48504 * 109.47229 * 269.99636 * 14 12 10 16 16 H 1.48503 * 109.47486 * 29.99628 * 14 12 10 17 17 H 1.48500 * 109.47493 * 149.99605 * 14 12 10 18 18 C 1.46496 * 120.00056 * 357.90142 * 9 7 6 19 19 C 1.53007 * 117.49719 * 159.40449 * 18 9 7 20 20 C 1.52999 * 117.49765 * 90.74745 * 18 9 7 21 21 H 1.08999 * 109.47121 * 266.91339 * 1 2 3 22 22 H 1.08998 * 109.46968 * 26.90939 * 1 2 3 23 23 H 1.08999 * 109.47583 * 146.91221 * 1 2 3 24 24 H 1.07997 * 126.06596 * 179.71638 * 4 3 2 25 25 H 1.08000 * 127.32183 * 179.97438 * 5 4 3 26 26 H 0.96998 * 119.99976 * 175.18662 * 13 12 10 27 27 H 1.09000 * 115.55550 * 305.07883 * 18 9 7 28 28 H 1.08996 * 117.49970 * 0.02562 * 19 18 9 29 29 H 1.09003 * 117.49249 * 145.02684 * 19 18 9 30 30 H 1.09000 * 117.50102 * 214.98152 * 20 18 9 31 31 H 1.09009 * 117.49985 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0496 0.0000 4 6 3.4738 0.7276 -0.0066 5 6 3.5623 -0.6661 -0.0048 6 6 2.2525 -1.1167 0.0034 7 6 1.8004 -2.5156 0.0083 8 8 0.6179 -2.7724 0.1356 9 7 2.6958 -3.5137 -0.1281 10 6 2.2805 -4.8167 -0.0806 11 1 1.4994 -5.1098 0.6054 12 6 2.8641 -5.7633 -0.9153 13 7 3.7301 -5.3884 -1.8292 14 14 2.4165 -7.5681 -0.7373 15 1 3.3405 -8.2143 0.2290 16 1 1.0213 -7.6858 -0.2426 17 1 2.5319 -8.2392 -2.0570 18 6 4.1136 -3.2036 -0.3273 19 6 5.1293 -4.3000 0.0006 20 6 4.9924 -3.0833 0.9194 21 1 -0.3633 -0.0553 1.0262 22 1 -0.3633 0.9164 -0.4651 23 1 -0.3634 -0.8610 -0.5610 24 1 4.3048 1.4173 -0.0125 25 1 4.4610 -1.2652 -0.0093 26 1 4.1894 -6.0544 -2.3643 27 1 4.3375 -2.5448 -1.1662 28 1 4.7426 -5.2520 0.3641 29 1 6.0216 -4.3619 -0.6225 30 1 5.7945 -2.3455 0.9005 31 1 4.5154 -3.2345 1.8879 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331503291.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:05 Heat of formation + Delta-G solvation = 79.670770 kcal Electronic energy + Delta-G solvation = -17001.101688 eV Core-core repulsion = 14285.843738 eV Total energy + Delta-G solvation = -2715.257950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.32450 -40.41939 -38.11541 -34.81564 -34.20128 -33.30243 -31.61733 -27.97649 -27.21448 -24.22981 -23.33717 -22.80723 -22.03525 -20.51564 -18.90895 -18.12786 -17.21174 -17.19556 -16.80391 -15.86049 -15.81897 -15.27948 -14.96227 -14.39368 -14.34475 -13.76704 -13.67002 -13.18435 -13.12457 -12.90851 -12.66033 -12.16141 -12.05571 -11.79992 -11.54843 -10.91121 -10.59089 -10.46815 -10.08048 -9.80982 -9.47683 -8.28686 -6.10148 0.47400 1.40173 1.42894 1.51131 1.65286 1.81252 2.26956 2.41143 2.91848 3.01243 3.36685 3.75055 3.80660 4.26488 4.31014 4.36070 4.38939 4.46186 4.55607 4.68190 4.79728 4.92826 5.06134 5.18396 5.39404 5.41938 5.59752 5.70478 5.90613 6.13212 6.46725 7.07357 7.20171 7.33911 7.93247 8.69600 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034118 B = 0.009204 C = 0.007676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.479578 B = 3041.306966 C = 3646.642998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.281 5.281 3 N -0.307 5.307 4 C -0.005 4.005 5 C -0.210 4.210 6 C -0.037 4.037 7 C 0.505 3.495 8 O -0.625 6.625 9 N -0.402 5.402 10 C -0.346 4.346 11 H 0.066 0.934 12 C 0.018 3.982 13 N -0.866 5.866 14 Si 0.979 3.021 15 H -0.260 1.260 16 H -0.280 1.280 17 H -0.274 1.274 18 C 0.079 3.921 19 C -0.115 4.115 20 C -0.194 4.194 21 H 0.085 0.915 22 H 0.116 0.884 23 H 0.083 0.917 24 H 0.224 0.776 25 H 0.190 0.810 26 H 0.276 0.724 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 6.435 2.185 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.068 5.068 3 N -0.139 5.139 4 C -0.181 4.181 5 C -0.238 4.238 6 C -0.165 4.165 7 C 0.295 3.705 8 O -0.513 6.513 9 N -0.117 5.117 10 C -0.474 4.474 11 H 0.084 0.916 12 C -0.188 4.188 13 N -0.500 5.500 14 Si 0.803 3.197 15 H -0.185 1.185 16 H -0.205 1.205 17 H -0.199 1.199 18 C -0.025 4.025 19 C -0.153 4.153 20 C -0.232 4.232 21 H 0.103 0.897 22 H 0.134 0.866 23 H 0.101 0.899 24 H 0.240 0.760 25 H 0.207 0.793 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.148 0.852 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.318 7.112 2.032 8.107 hybrid contribution -0.080 -1.737 -0.066 1.740 sum 3.238 5.375 1.966 6.576 Atomic orbital electron populations 1.22232 0.72343 1.05356 1.04756 1.45726 1.08335 1.01711 1.51059 1.73046 1.05291 1.13836 1.21747 1.24195 0.93699 0.95197 1.05022 1.23401 0.96483 0.96059 1.07851 1.21701 0.92764 0.89403 1.12649 1.17469 0.85519 0.83914 0.83645 1.90558 1.17721 1.84974 1.58062 1.42803 1.04962 1.04236 1.59728 1.19377 1.23235 0.83719 1.21035 0.91615 1.26016 0.96144 1.03620 0.93026 1.70035 1.25197 1.35816 1.18997 0.85145 0.78731 0.77719 0.78131 1.18486 1.20484 1.19913 1.21510 0.79708 1.03682 0.97628 1.22731 0.98862 0.93325 1.00378 1.23714 1.02551 1.02572 0.94387 0.89674 0.86564 0.89850 0.75992 0.79297 0.91433 0.87463 0.90794 0.88206 0.85151 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.05 10.65 127.77 1.36 4.42 16 2 N -0.28 -10.90 3.75 -356.05 -1.34 -12.23 16 3 N -0.31 -10.77 11.90 -57.15 -0.68 -11.45 16 4 C 0.00 -0.15 12.03 85.18 1.02 0.88 16 5 C -0.21 -7.43 8.93 22.68 0.20 -7.22 16 6 C -0.04 -1.61 6.87 40.76 0.28 -1.33 16 7 C 0.50 26.33 7.60 86.54 0.66 26.98 16 8 O -0.62 -35.92 14.75 -4.27 -0.06 -35.98 16 9 N -0.40 -20.76 2.87 -617.26 -1.77 -22.53 16 10 C -0.35 -19.14 8.40 84.11 0.71 -18.43 16 11 H 0.07 3.90 7.71 -2.91 -0.02 3.88 16 12 C 0.02 0.90 3.78 84.96 0.32 1.22 16 13 N -0.87 -43.46 10.26 21.68 0.22 -43.24 16 14 Si 0.98 40.97 29.56 68.60 2.03 42.99 16 15 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 18 C 0.08 3.36 2.96 44.99 0.13 3.49 16 19 C -0.12 -4.50 7.65 30.62 0.23 -4.27 16 20 C -0.19 -6.57 8.83 30.62 0.27 -6.30 16 21 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 22 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 23 H 0.08 3.12 6.67 -2.39 -0.02 3.10 16 24 H 0.22 4.48 8.06 -2.91 -0.02 4.45 16 25 H 0.19 6.02 3.32 -2.91 -0.01 6.01 16 26 H 0.28 12.91 8.31 -92.71 -0.77 12.14 16 27 H 0.11 4.47 6.73 -2.39 -0.02 4.45 16 28 H 0.07 3.29 6.21 -2.39 -0.01 3.27 16 29 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.13 3.29 7.66 -2.39 -0.02 3.28 16 31 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -66.79 259.35 4.74 -62.05 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.15 Total: 20.98 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.19 Total: -0.58 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -3.57 Total: -89.46 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.06 Total: -35.98 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -66.79 4.74 -62.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331503291.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.717 kcal (2) G-P(sol) polarization free energy of solvation -66.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds