Wall clock time and date at job start Sun Mar 29 2020 22:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34286 * 125.75404 * 2 1 4 4 C 1.38108 * 107.40645 * 180.02562 * 3 2 1 5 5 C 1.47355 * 126.42156 * 179.97438 * 4 3 2 6 6 O 1.21629 * 120.00233 * 352.84734 * 5 4 3 7 7 N 1.34779 * 120.00054 * 172.84104 * 5 4 3 8 8 C 1.36985 * 119.99598 * 5.74731 * 7 5 4 9 9 H 1.07997 * 120.00071 * 298.26471 * 8 7 5 10 10 C 1.38971 * 119.99687 * 118.26279 * 8 7 5 11 11 N 1.31414 * 120.00535 * 1.29073 * 10 8 7 12 12 Si 1.86797 * 120.00070 * 181.28700 * 10 8 7 13 13 H 1.48496 * 109.47784 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47266 * 300.00766 * 12 10 8 15 15 H 1.48503 * 109.47001 * 60.00232 * 12 10 8 16 16 C 1.46492 * 119.99933 * 185.74670 * 7 5 4 17 17 C 1.53005 * 117.49571 * 184.73893 * 16 7 5 18 18 C 1.53006 * 60.00154 * 252.50828 * 17 16 7 19 19 C 1.41321 * 107.15249 * 0.22749 * 4 3 2 20 20 N 1.30443 * 108.02902 * 359.61560 * 19 4 3 21 21 H 1.08994 * 109.47607 * 89.99754 * 1 2 3 22 22 H 1.08998 * 109.46923 * 209.99990 * 1 2 3 23 23 H 1.08998 * 109.46845 * 329.99270 * 1 2 3 24 24 H 1.08007 * 126.29490 * 0.02562 * 3 2 1 25 25 H 0.96996 * 120.00251 * 175.00731 * 11 10 8 26 26 H 1.09000 * 115.55621 * 330.44822 * 16 7 5 27 27 H 1.08999 * 117.50203 * 359.97438 * 17 16 7 28 28 H 1.09000 * 117.49795 * 145.02479 * 17 16 7 29 29 H 1.08998 * 117.49707 * 252.51236 * 18 17 16 30 30 H 1.08997 * 117.51442 * 107.48029 * 18 17 16 31 31 H 1.08000 * 125.97716 * 179.73240 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.0898 0.0000 4 6 3.5605 0.6550 -0.0006 5 6 4.7642 1.5051 -0.0013 6 8 4.6580 2.7096 -0.1326 7 7 5.9828 0.9479 0.1436 8 6 6.1133 -0.4154 0.1733 9 1 5.6335 -0.9869 0.9540 10 6 6.8632 -1.0630 -0.8011 11 7 7.4680 -0.3656 -1.7365 12 14 7.0117 -2.9250 -0.7815 13 1 7.8595 -3.3661 -1.9180 14 1 7.6323 -3.3587 0.4960 15 1 5.6615 -3.5305 -0.9065 16 6 7.1676 1.8002 0.2693 17 6 8.5322 1.1099 0.3195 18 6 7.9459 1.7385 1.5852 19 6 3.5311 -0.7579 -0.0063 20 7 2.2826 -1.1356 -0.0006 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.9168 2.1173 0.0004 25 1 8.0496 -0.8097 -2.3731 26 1 7.1092 2.7642 -0.2360 27 1 8.5483 0.0217 0.2594 28 1 9.3718 1.6198 -0.1531 29 1 8.3997 2.6618 1.9452 30 1 7.5761 1.0641 2.3575 31 1 4.3916 -1.4104 -0.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331572718.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:09 Heat of formation + Delta-G solvation = 90.052550 kcal Electronic energy + Delta-G solvation = -16737.298426 eV Core-core repulsion = 14022.490664 eV Total energy + Delta-G solvation = -2714.807762 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53219 -38.28571 -35.84863 -33.42503 -32.52835 -31.19676 -29.41207 -26.57557 -25.17280 -22.43958 -21.18900 -20.42674 -19.91585 -19.11579 -17.37735 -16.04973 -15.28784 -15.19528 -14.99233 -14.38024 -13.70397 -13.45775 -13.08829 -12.95747 -12.40899 -12.22120 -12.00965 -11.94295 -11.37496 -11.05631 -10.72450 -10.45037 -10.33853 -10.20520 -9.55490 -9.18796 -8.84493 -8.74381 -8.48228 -7.88021 -7.02362 -6.27576 -4.30696 2.28658 2.97866 3.12615 3.16885 3.19885 3.23764 4.05550 4.59944 4.70551 4.87272 5.01425 5.27403 5.31196 5.40378 5.48944 5.89169 6.12305 6.20331 6.28014 6.29940 6.41813 6.58390 6.67974 6.97915 7.17140 7.36110 7.42714 7.46760 7.49270 8.22843 8.29978 8.39047 9.03770 9.56949 10.02373 10.68866 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.010788 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.268178 B = 2594.935113 C = 3525.831677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.383 5.383 3 C 0.091 3.909 4 C -0.245 4.245 5 C 0.570 3.430 6 O -0.608 6.608 7 N -0.415 5.415 8 C -0.354 4.354 9 H 0.086 0.914 10 C 0.058 3.942 11 N -0.843 5.843 12 Si 0.897 3.103 13 H -0.281 1.281 14 H -0.269 1.269 15 H -0.264 1.264 16 C 0.109 3.891 17 C -0.140 4.140 18 C -0.221 4.221 19 C 0.094 3.906 20 N -0.331 5.331 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.176 0.824 25 H 0.270 0.730 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -0.969 3.027 7.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.163 5.163 3 C -0.059 4.059 4 C -0.260 4.260 5 C 0.361 3.639 6 O -0.494 6.494 7 N -0.132 5.132 8 C -0.482 4.482 9 H 0.103 0.897 10 C -0.151 4.151 11 N -0.475 5.475 12 Si 0.722 3.278 13 H -0.206 1.206 14 H -0.194 1.194 15 H -0.189 1.189 16 C 0.004 3.996 17 C -0.178 4.178 18 C -0.260 4.260 19 C -0.092 4.092 20 N -0.152 5.152 21 H 0.088 0.912 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.194 0.806 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.400 -1.408 2.728 8.011 hybrid contribution 0.755 -0.263 -0.150 0.813 sum -6.645 -1.670 2.578 7.320 Atomic orbital electron populations 1.21738 0.75144 1.03915 1.02872 1.48293 1.06347 1.04427 1.57276 1.22790 0.90740 0.92949 0.99413 1.20343 0.92871 0.94140 1.18636 1.17489 0.83142 0.85926 0.77380 1.90587 1.87456 1.15576 1.55813 1.42371 1.02284 1.05130 1.63439 1.19112 1.37012 0.81096 1.11018 0.89672 1.25675 0.96151 0.99228 0.94088 1.69952 1.26437 1.36359 1.14799 0.86485 0.79304 0.83622 0.78357 1.20606 1.19430 1.18906 1.21185 0.85992 0.95217 0.97239 1.22921 0.95285 1.01803 0.97795 1.23349 1.07389 1.02083 0.93164 1.25672 0.94301 0.95715 0.93533 1.77164 1.02849 1.07718 1.27474 0.91225 0.89669 0.89957 0.80650 0.91935 0.88026 0.87116 0.90965 0.90620 0.89660 0.76536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.15 11.44 59.85 0.68 1.84 16 2 N -0.38 -6.61 3.98 -67.57 -0.27 -6.88 16 3 C 0.09 1.71 11.31 -16.53 -0.19 1.53 16 4 C -0.25 -5.60 6.03 -105.06 -0.63 -6.23 16 5 C 0.57 14.74 7.62 -12.55 -0.10 14.64 16 6 O -0.61 -16.74 16.65 5.25 0.09 -16.65 16 7 N -0.42 -10.61 2.68 -108.95 -0.29 -10.90 16 8 C -0.35 -8.70 5.33 -14.98 -0.08 -8.78 16 9 H 0.09 2.03 6.20 -52.49 -0.33 1.70 16 10 C 0.06 1.41 3.82 -17.46 -0.07 1.34 16 11 N -0.84 -21.77 11.26 55.50 0.62 -21.14 16 12 Si 0.90 18.67 29.04 -169.99 -4.94 13.73 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 16 C 0.11 2.64 5.71 -67.93 -0.39 2.25 16 17 C -0.14 -3.10 8.40 -26.73 -0.22 -3.33 16 18 C -0.22 -4.59 10.34 -26.72 -0.28 -4.87 16 19 C 0.09 2.06 10.33 -16.97 -0.18 1.89 16 20 N -0.33 -6.76 12.50 30.87 0.39 -6.37 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.18 2.82 8.06 -52.48 -0.42 2.39 16 25 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 26 H 0.10 2.55 7.70 -51.93 -0.40 2.15 16 27 H 0.11 2.63 5.45 -51.93 -0.28 2.35 16 28 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.22 4.86 4.22 -52.49 -0.22 4.64 16 LS Contribution 266.54 15.07 4.02 4.02 Total: -1.00 -30.56 266.54 -5.15 -35.71 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.32 Total: 8.20 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.44 Total: 0.28 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.45 Total: -45.29 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.09 Total: -16.65 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.94 Total: 13.73 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.56 -5.15 -35.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331572718.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.765 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds