Wall clock time and date at job start Sun Mar 29 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34286 * 125.75404 * 2 1 4 4 C 1.38108 * 107.40645 * 180.02562 * 3 2 1 5 5 C 1.47355 * 126.42156 * 179.97438 * 4 3 2 6 6 O 1.21629 * 120.00233 * 352.84734 * 5 4 3 7 7 N 1.34779 * 120.00054 * 172.84104 * 5 4 3 8 8 C 1.36985 * 119.99598 * 5.74731 * 7 5 4 9 9 H 1.07997 * 120.00071 * 298.26471 * 8 7 5 10 10 C 1.38971 * 119.99687 * 118.26279 * 8 7 5 11 11 N 1.31414 * 120.00535 * 1.29073 * 10 8 7 12 12 Si 1.86797 * 120.00070 * 181.28700 * 10 8 7 13 13 H 1.48496 * 109.47784 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47266 * 300.00766 * 12 10 8 15 15 H 1.48503 * 109.47001 * 60.00232 * 12 10 8 16 16 C 1.46492 * 119.99933 * 185.74670 * 7 5 4 17 17 C 1.53005 * 117.49571 * 184.73893 * 16 7 5 18 18 C 1.53006 * 60.00154 * 252.50828 * 17 16 7 19 19 C 1.41321 * 107.15249 * 0.22749 * 4 3 2 20 20 N 1.30443 * 108.02902 * 359.61560 * 19 4 3 21 21 H 1.08994 * 109.47607 * 89.99754 * 1 2 3 22 22 H 1.08998 * 109.46923 * 209.99990 * 1 2 3 23 23 H 1.08998 * 109.46845 * 329.99270 * 1 2 3 24 24 H 1.08007 * 126.29490 * 0.02562 * 3 2 1 25 25 H 0.96996 * 120.00251 * 175.00731 * 11 10 8 26 26 H 1.09000 * 115.55621 * 330.44822 * 16 7 5 27 27 H 1.08999 * 117.50203 * 359.97438 * 17 16 7 28 28 H 1.09000 * 117.49795 * 145.02479 * 17 16 7 29 29 H 1.08998 * 117.49707 * 252.51236 * 18 17 16 30 30 H 1.08997 * 117.51442 * 107.48029 * 18 17 16 31 31 H 1.08000 * 125.97716 * 179.73240 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.0898 0.0000 4 6 3.5605 0.6550 -0.0006 5 6 4.7642 1.5051 -0.0013 6 8 4.6580 2.7096 -0.1326 7 7 5.9828 0.9479 0.1436 8 6 6.1133 -0.4154 0.1733 9 1 5.6335 -0.9869 0.9540 10 6 6.8632 -1.0630 -0.8011 11 7 7.4680 -0.3656 -1.7365 12 14 7.0117 -2.9250 -0.7815 13 1 7.8595 -3.3661 -1.9180 14 1 7.6323 -3.3587 0.4960 15 1 5.6615 -3.5305 -0.9065 16 6 7.1676 1.8002 0.2693 17 6 8.5322 1.1099 0.3195 18 6 7.9459 1.7385 1.5852 19 6 3.5311 -0.7579 -0.0063 20 7 2.2826 -1.1356 -0.0006 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.9168 2.1173 0.0004 25 1 8.0496 -0.8097 -2.3731 26 1 7.1092 2.7642 -0.2360 27 1 8.5483 0.0217 0.2594 28 1 9.3718 1.6198 -0.1531 29 1 8.3997 2.6618 1.9452 30 1 7.5761 1.0641 2.3575 31 1 4.3916 -1.4104 -0.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331572718.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:08 Heat of formation + Delta-G solvation = 70.228663 kcal Electronic energy + Delta-G solvation = -16738.158054 eV Core-core repulsion = 14022.490664 eV Total energy + Delta-G solvation = -2715.667390 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.08732 -40.13020 -37.73584 -35.16928 -34.00741 -33.05970 -30.98268 -27.86437 -27.05217 -24.11677 -22.91757 -22.07520 -21.54791 -20.91442 -19.08436 -17.79077 -17.03582 -16.87808 -16.35982 -16.08166 -15.43519 -15.07240 -14.80186 -14.64285 -13.84807 -13.65136 -13.40184 -13.37290 -13.20420 -12.75114 -12.52149 -12.12589 -12.03725 -11.83823 -11.35945 -11.00064 -10.61066 -10.38467 -10.31516 -9.49992 -8.90302 -8.14220 -6.22685 0.75344 1.42145 1.48611 1.53177 1.56635 1.70806 2.30959 2.77074 2.98183 3.04490 3.49818 3.85677 4.04096 4.30655 4.43353 4.48406 4.50856 4.54900 4.59964 4.71637 4.84862 4.92279 4.98431 5.20792 5.40148 5.47706 5.68151 5.74653 6.11671 6.33502 6.46026 6.76565 7.14646 7.65555 8.12520 8.83039 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.010788 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.268178 B = 2594.935113 C = 3525.831677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.367 5.367 3 C 0.112 3.888 4 C -0.291 4.291 5 C 0.554 3.446 6 O -0.641 6.641 7 N -0.424 5.424 8 C -0.357 4.357 9 H 0.090 0.910 10 C 0.025 3.975 11 N -0.877 5.877 12 Si 0.958 3.042 13 H -0.284 1.284 14 H -0.260 1.260 15 H -0.260 1.260 16 C 0.071 3.929 17 C -0.132 4.132 18 C -0.191 4.191 19 C 0.083 3.917 20 N -0.341 5.341 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.118 0.882 24 H 0.206 0.794 25 H 0.270 0.730 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.854 -1.625 3.746 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.146 5.146 3 C -0.040 4.040 4 C -0.306 4.306 5 C 0.345 3.655 6 O -0.530 6.530 7 N -0.141 5.141 8 C -0.484 4.484 9 H 0.107 0.893 10 C -0.181 4.181 11 N -0.511 5.511 12 Si 0.781 3.219 13 H -0.209 1.209 14 H -0.184 1.184 15 H -0.185 1.185 16 C -0.034 4.034 17 C -0.169 4.169 18 C -0.229 4.229 19 C -0.102 4.102 20 N -0.163 5.163 21 H 0.108 0.892 22 H 0.116 0.884 23 H 0.136 0.864 24 H 0.223 0.777 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.783 -2.098 3.467 9.673 hybrid contribution 1.031 -0.004 -0.374 1.097 sum -7.752 -2.103 3.093 8.607 Atomic orbital electron populations 1.22322 0.71123 1.06431 1.04996 1.48756 1.08371 1.03045 1.54438 1.23142 0.89626 0.94439 0.96839 1.20324 0.93397 0.94349 1.22496 1.18053 0.84221 0.86079 0.77107 1.90529 1.88024 1.16779 1.57656 1.42598 1.02656 1.05685 1.63134 1.19298 1.36916 0.80921 1.11305 0.89316 1.26301 0.95488 1.02953 0.93391 1.70071 1.27332 1.38007 1.15644 0.85543 0.79231 0.78707 0.78442 1.20892 1.18393 1.18493 1.21292 0.86831 0.94967 1.00272 1.22830 0.94506 1.00867 0.98735 1.23356 1.04895 1.02887 0.91785 1.25395 0.94835 0.95347 0.94652 1.77079 1.02460 1.09111 1.27640 0.89219 0.88357 0.86383 0.77739 0.92015 0.89938 0.88704 0.89532 0.87647 0.89777 0.77687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 11.44 127.77 1.46 3.07 16 2 N -0.37 -11.67 3.98 -367.70 -1.46 -13.13 16 3 C 0.11 4.03 11.31 84.29 0.95 4.98 16 4 C -0.29 -13.30 6.03 -20.15 -0.12 -13.42 16 5 C 0.55 29.31 7.62 86.64 0.66 29.97 16 6 O -0.64 -36.21 16.65 -4.12 -0.07 -36.28 16 7 N -0.42 -22.21 2.68 -616.86 -1.65 -23.86 16 8 C -0.36 -17.77 5.33 84.06 0.45 -17.32 16 9 H 0.09 4.29 6.20 -2.91 -0.02 4.27 16 10 C 0.02 1.21 3.82 84.93 0.32 1.54 16 11 N -0.88 -46.07 11.26 21.67 0.24 -45.82 16 12 Si 0.96 38.35 29.04 68.60 1.99 40.35 16 13 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 14 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 15 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 16 C 0.07 3.52 5.71 45.00 0.26 3.78 16 17 C -0.13 -5.81 8.40 30.60 0.26 -5.55 16 18 C -0.19 -7.76 10.34 30.60 0.32 -7.44 16 19 C 0.08 3.64 10.33 85.66 0.88 4.53 16 20 N -0.34 -13.42 12.50 -56.26 -0.70 -14.13 16 21 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.21 6.01 8.06 -2.91 -0.02 5.99 16 25 H 0.27 13.51 8.32 -92.71 -0.77 12.74 16 26 H 0.08 4.31 7.70 -2.39 -0.02 4.29 16 27 H 0.09 4.52 5.45 -2.39 -0.01 4.50 16 28 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 29 H 0.11 3.64 8.14 -2.39 -0.02 3.63 16 30 H 0.08 3.44 8.14 -2.39 -0.02 3.43 16 31 H 0.21 9.32 4.22 -2.91 -0.01 9.31 16 Total: -1.00 -67.28 266.54 4.94 -62.34 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.15 Total: 26.40 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.44 Total: 4.14 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -3.58 Total: -96.94 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.07 Total: -36.28 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.99 Total: 40.35 kcal Total: -67.28 4.94 -62.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331572718.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.571 kcal (2) G-P(sol) polarization free energy of solvation -67.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds