Wall clock time and date at job start Sun Mar 29 2020 21:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35229 * 120.37515 * 2 1 4 4 N 1.35540 * 120.68933 * 179.97438 * 3 2 1 5 5 H 0.96995 * 119.27053 * 180.02562 * 4 3 2 6 6 C 1.35537 * 121.45437 * 359.97016 * 4 3 2 7 7 C 1.35222 * 120.69260 * 0.04903 * 6 4 3 8 8 C 1.41350 * 119.25343 * 359.70330 * 7 6 4 9 9 N 1.34334 * 120.67612 * 180.27222 * 8 7 6 10 10 C 1.33232 * 119.99699 * 355.38931 * 9 8 7 11 11 O 1.21934 * 120.00309 * 64.79790 * 10 9 8 12 12 N 1.34785 * 120.00010 * 244.80607 * 10 9 8 13 13 C 1.46494 * 119.99922 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.46899 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99968 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99918 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99975 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00055 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47120 * 89.99936 * 18 16 14 20 20 H 1.48501 * 109.47083 * 209.99762 * 18 16 14 21 21 H 1.48496 * 109.47285 * 330.00145 * 18 16 14 22 22 H 1.08998 * 109.47187 * 90.00217 * 1 2 3 23 23 H 1.08998 * 109.47588 * 210.00546 * 1 2 3 24 24 H 1.09001 * 109.47073 * 330.00307 * 1 2 3 25 25 H 1.07998 * 119.65435 * 359.97438 * 3 2 1 26 26 H 1.07999 * 119.65587 * 180.02562 * 6 4 3 27 27 H 1.07995 * 120.37901 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99700 * 359.97438 * 12 10 9 29 29 H 1.09007 * 109.47188 * 299.99141 * 13 12 10 30 30 H 1.08993 * 109.47398 * 59.99804 * 13 12 10 31 31 H 0.97004 * 120.00364 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1907 1.1667 0.0000 4 7 3.5461 1.1741 0.0005 5 1 4.0157 2.0228 0.0009 6 6 4.2597 0.0218 0.0017 7 6 3.6345 -1.1772 0.0013 8 6 2.2216 -1.2195 0.0061 9 7 1.5712 -2.3949 0.0114 10 6 2.2546 -3.5348 -0.0806 11 8 3.0223 -3.8590 0.8095 12 7 2.0976 -4.3297 -1.1577 13 6 2.8487 -5.5834 -1.2586 14 6 2.4940 -6.2791 -2.5476 15 1 1.7802 -5.8322 -3.2237 16 6 3.0808 -7.4860 -2.8636 17 7 2.7709 -8.0934 -3.9882 18 14 4.3160 -8.2586 -1.6945 19 1 3.6043 -9.1390 -0.7334 20 1 5.2958 -9.0616 -2.4694 21 1 5.0298 -7.1895 -0.9512 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6512 2.1022 -0.0004 26 1 5.3390 0.0616 0.0025 27 1 4.2081 -2.0923 0.0018 28 1 1.4867 -4.0719 -1.8657 29 1 3.9173 -5.3690 -1.2432 30 1 2.5952 -6.2276 -0.4168 31 1 3.1835 -8.9427 -4.2104 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335168482.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:45 Heat of formation + Delta-G solvation = 25.418504 kcal Electronic energy + Delta-G solvation = -15816.154566 eV Core-core repulsion = 13098.544062 eV Total energy + Delta-G solvation = -2717.610505 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79237 -38.76274 -35.22911 -33.96702 -32.97375 -32.17085 -30.63806 -27.69550 -27.15850 -24.10582 -22.41101 -21.64551 -19.64953 -18.81030 -17.77461 -16.75379 -16.24633 -15.23224 -14.98301 -14.68645 -14.57965 -13.99179 -13.53279 -13.19442 -12.93355 -12.78640 -12.30826 -12.19543 -11.96704 -11.52486 -11.16488 -10.77715 -10.67552 -9.98061 -9.82749 -9.55956 -9.35348 -8.65696 -8.58951 -7.84823 -7.31055 -6.10690 -4.11310 1.01904 1.26557 2.74436 3.33379 3.35857 3.40569 3.50553 3.75109 4.35528 4.43021 4.46809 4.73194 4.94448 5.04601 5.24511 5.32181 5.54406 5.73904 5.83396 5.95385 6.10662 6.44920 6.60045 6.72660 6.90264 7.09088 7.24362 7.47022 7.61762 8.21581 8.37078 8.83161 8.92536 9.43169 9.58075 11.01574 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.040612 B = 0.005428 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.284966 B = 5157.432472 C = 5398.249673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.159 4.159 3 C 0.111 3.889 4 N -0.593 5.593 5 H 0.417 0.583 6 C 0.123 3.877 7 C -0.242 4.242 8 C 0.308 3.692 9 N -0.617 5.617 10 C 0.657 3.343 11 O -0.610 6.610 12 N -0.703 5.703 13 C 0.230 3.770 14 C -0.538 4.538 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.896 5.896 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.261 1.261 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.166 0.834 26 H 0.164 0.836 27 H 0.151 0.849 28 H 0.395 0.605 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 24.225 6.503 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.168 4.168 3 C -0.019 4.019 4 N -0.198 5.198 5 H 0.252 0.748 6 C -0.007 4.007 7 C -0.269 4.269 8 C 0.143 3.857 9 N -0.353 5.353 10 C 0.357 3.643 11 O -0.491 6.491 12 N -0.353 5.353 13 C 0.106 3.894 14 C -0.576 4.576 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.533 5.533 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.186 1.186 22 H 0.085 0.915 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.184 0.816 26 H 0.181 0.819 27 H 0.169 0.831 28 H 0.229 0.771 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.223 23.191 7.053 24.270 hybrid contribution 1.276 -0.317 0.149 1.323 sum 2.499 22.874 7.202 24.111 Atomic orbital electron populations 1.20402 0.89003 1.02824 1.02334 1.19310 0.97533 0.89940 1.10015 1.21542 0.82673 0.99681 0.97963 1.40942 1.05843 1.09117 1.63879 0.74754 1.21705 0.97617 0.85330 0.96055 1.21951 0.95935 0.98392 1.10634 1.18649 0.89444 0.91252 0.86362 1.68701 1.36958 0.97552 1.32077 1.17400 0.78599 0.85367 0.82948 1.90881 1.39284 1.78544 1.40422 1.45773 1.46034 1.23505 1.19972 1.19388 0.91572 0.81093 0.97300 1.21142 1.27029 1.05784 1.03642 0.90293 1.24785 0.96311 0.96396 0.95175 1.69889 1.43407 1.16888 1.23152 0.86807 0.81652 0.79984 0.81185 1.19850 1.20991 1.18556 0.91471 0.90010 0.92434 0.81649 0.81863 0.83140 0.77118 0.96089 0.96462 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.81 36.00 0.35 -0.55 16 2 C -0.16 -1.82 5.89 -104.51 -0.62 -2.44 16 3 C 0.11 0.73 10.82 -16.98 -0.18 0.55 16 4 N -0.59 -3.15 5.24 -13.05 -0.07 -3.22 16 5 H 0.42 0.38 8.90 -40.82 -0.36 0.02 16 6 C 0.12 1.04 11.17 -16.99 -0.19 0.85 16 7 C -0.24 -3.56 9.05 -39.47 -0.36 -3.92 16 8 C 0.31 5.07 6.59 -84.40 -0.56 4.51 16 9 N -0.62 -12.88 9.62 -14.59 -0.14 -13.02 16 10 C 0.66 16.13 6.91 -88.28 -0.61 15.52 16 11 O -0.61 -16.70 15.82 4.98 0.08 -16.63 16 12 N -0.70 -17.53 5.55 -66.75 -0.37 -17.90 16 13 C 0.23 6.36 4.50 -5.19 -0.02 6.33 16 14 C -0.54 -16.00 9.83 -34.44 -0.34 -16.34 16 15 H 0.08 2.45 7.84 -52.49 -0.41 2.04 16 16 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 17 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 18 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 19 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.08 1.07 7.56 -51.93 -0.39 0.67 16 24 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 25 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 26 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 27 H 0.15 2.73 6.36 -52.49 -0.33 2.40 16 28 H 0.40 9.21 8.42 -40.82 -0.34 8.86 16 29 H 0.02 0.60 7.20 -51.92 -0.37 0.23 16 30 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 31 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 272.94 15.07 4.11 4.11 Total: -1.00 -40.01 272.94 -6.37 -46.38 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.47 Total: 2.61 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -2.62 Total: 6.70 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.19 Total: -61.18 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.08 Total: -16.63 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -40.01 -6.37 -46.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335168482.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.797 kcal (2) G-P(sol) polarization free energy of solvation -40.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds