Wall clock time and date at job start Sun Mar 29 2020 21:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35229 * 120.37515 * 2 1 4 4 N 1.35540 * 120.68933 * 179.97438 * 3 2 1 5 5 H 0.96995 * 119.27053 * 180.02562 * 4 3 2 6 6 C 1.35537 * 121.45437 * 359.97016 * 4 3 2 7 7 C 1.35222 * 120.69260 * 0.04903 * 6 4 3 8 8 C 1.41350 * 119.25343 * 359.70330 * 7 6 4 9 9 N 1.34334 * 120.67612 * 180.27222 * 8 7 6 10 10 C 1.33232 * 119.99699 * 355.38931 * 9 8 7 11 11 O 1.21934 * 120.00309 * 64.79790 * 10 9 8 12 12 N 1.34785 * 120.00010 * 244.80607 * 10 9 8 13 13 C 1.46494 * 119.99922 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.46899 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99968 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99918 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99975 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00055 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47120 * 89.99936 * 18 16 14 20 20 H 1.48501 * 109.47083 * 209.99762 * 18 16 14 21 21 H 1.48496 * 109.47285 * 330.00145 * 18 16 14 22 22 H 1.08998 * 109.47187 * 90.00217 * 1 2 3 23 23 H 1.08998 * 109.47588 * 210.00546 * 1 2 3 24 24 H 1.09001 * 109.47073 * 330.00307 * 1 2 3 25 25 H 1.07998 * 119.65435 * 359.97438 * 3 2 1 26 26 H 1.07999 * 119.65587 * 180.02562 * 6 4 3 27 27 H 1.07995 * 120.37901 * 179.97438 * 7 6 4 28 28 H 0.96996 * 119.99700 * 359.97438 * 12 10 9 29 29 H 1.09007 * 109.47188 * 299.99141 * 13 12 10 30 30 H 1.08993 * 109.47398 * 59.99804 * 13 12 10 31 31 H 0.97004 * 120.00364 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1907 1.1667 0.0000 4 7 3.5461 1.1741 0.0005 5 1 4.0157 2.0228 0.0009 6 6 4.2597 0.0218 0.0017 7 6 3.6345 -1.1772 0.0013 8 6 2.2216 -1.2195 0.0061 9 7 1.5712 -2.3949 0.0114 10 6 2.2546 -3.5348 -0.0806 11 8 3.0223 -3.8590 0.8095 12 7 2.0976 -4.3297 -1.1577 13 6 2.8487 -5.5834 -1.2586 14 6 2.4940 -6.2791 -2.5476 15 1 1.7802 -5.8322 -3.2237 16 6 3.0808 -7.4860 -2.8636 17 7 2.7709 -8.0934 -3.9882 18 14 4.3160 -8.2586 -1.6945 19 1 3.6043 -9.1390 -0.7334 20 1 5.2958 -9.0616 -2.4694 21 1 5.0298 -7.1895 -0.9512 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6512 2.1022 -0.0004 26 1 5.3390 0.0616 0.0025 27 1 4.2081 -2.0923 0.0018 28 1 1.4867 -4.0719 -1.8657 29 1 3.9173 -5.3690 -1.2432 30 1 2.5952 -6.2276 -0.4168 31 1 3.1835 -8.9427 -4.2104 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335168482.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:45 Heat of formation + Delta-G solvation = -9.775439 kcal Electronic energy + Delta-G solvation = -15817.680690 eV Core-core repulsion = 13098.544062 eV Total energy + Delta-G solvation = -2719.136628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.76505 -40.36578 -36.53999 -35.86035 -34.38289 -33.93300 -31.86308 -29.69428 -28.04668 -25.42779 -23.75222 -23.18140 -21.36692 -19.68845 -19.30060 -18.28228 -17.69717 -17.09488 -16.49787 -16.20830 -15.62718 -15.51005 -15.06689 -14.65964 -14.42110 -14.01605 -13.74183 -13.64888 -13.16515 -13.10535 -12.72798 -12.38599 -12.20986 -11.93119 -11.72379 -11.60896 -10.95536 -10.34446 -10.18241 -9.80761 -8.46045 -8.43056 -6.51486 0.08020 0.36509 1.29108 1.30085 1.45253 1.90284 2.07852 2.25749 2.41166 2.89621 2.97080 3.74307 3.84497 4.09650 4.17610 4.33477 4.60549 4.75424 4.84700 4.96176 5.01442 5.03724 5.18440 5.23519 5.55825 5.63665 5.67141 5.85144 6.09639 6.36278 6.47419 6.81177 7.05630 7.13164 7.82466 8.71485 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.040612 B = 0.005428 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.284966 B = 5157.432472 C = 5398.249673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.202 4.202 3 C 0.166 3.834 4 N -0.553 5.553 5 H 0.451 0.549 6 C 0.182 3.818 7 C -0.308 4.308 8 C 0.298 3.702 9 N -0.688 5.688 10 C 0.666 3.334 11 O -0.658 6.658 12 N -0.711 5.711 13 C 0.247 3.753 14 C -0.550 4.550 15 H 0.053 0.947 16 C 0.029 3.971 17 N -0.929 5.929 18 Si 0.943 3.057 19 H -0.265 1.265 20 H -0.262 1.262 21 H -0.265 1.265 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.099 0.901 25 H 0.234 0.766 26 H 0.213 0.787 27 H 0.104 0.896 28 H 0.398 0.602 29 H 0.010 0.990 30 H 0.001 0.999 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 29.029 7.213 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.210 4.210 3 C 0.034 3.966 4 N -0.157 5.157 5 H 0.294 0.706 6 C 0.049 3.951 7 C -0.336 4.336 8 C 0.144 3.856 9 N -0.432 5.432 10 C 0.367 3.633 11 O -0.542 6.542 12 N -0.362 5.362 13 C 0.122 3.878 14 C -0.588 4.588 15 H 0.071 0.929 16 C -0.172 4.172 17 N -0.568 5.568 18 Si 0.766 3.234 19 H -0.190 1.190 20 H -0.186 1.186 21 H -0.189 1.189 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.118 0.882 25 H 0.250 0.750 26 H 0.230 0.770 27 H 0.122 0.878 28 H 0.232 0.768 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.865 28.156 7.749 29.343 hybrid contribution 0.861 -1.288 -0.084 1.551 sum 3.726 26.868 7.665 28.187 Atomic orbital electron populations 1.20339 0.88516 1.02833 1.02283 1.19532 0.98451 0.89527 1.13474 1.22429 0.82765 1.00233 0.91175 1.41341 1.06053 1.09878 1.58386 0.70632 1.22173 0.99629 0.83955 0.89389 1.21683 0.95380 0.99540 1.17028 1.19394 0.90772 0.91636 0.83771 1.68554 1.35613 0.97435 1.41574 1.17762 0.77389 0.86521 0.81659 1.90781 1.41910 1.79701 1.41850 1.45708 1.46433 1.23162 1.20881 1.18979 0.91254 0.82118 0.95458 1.21243 1.26926 1.06488 1.04101 0.92925 1.25611 0.98080 0.96668 0.96799 1.69979 1.44552 1.17606 1.24635 0.85789 0.79447 0.79051 0.79152 1.19003 1.18629 1.18946 0.91652 0.94141 0.88214 0.74962 0.77015 0.87750 0.76784 0.97178 0.98145 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 9.81 71.23 0.70 -0.87 16 2 C -0.20 -4.11 5.89 -19.79 -0.12 -4.23 16 3 C 0.17 1.02 10.82 83.43 0.90 1.92 16 4 N -0.55 -1.65 5.24 -195.21 -1.02 -2.68 16 5 H 0.45 -3.53 8.90 -92.71 -0.82 -4.35 16 6 C 0.18 2.22 11.17 83.43 0.93 3.15 16 7 C -0.31 -9.13 9.05 22.34 0.20 -8.93 16 8 C 0.30 10.11 6.59 40.29 0.27 10.38 16 9 N -0.69 -31.31 9.62 -319.04 -3.07 -34.38 16 10 C 0.67 35.74 6.91 179.53 1.24 36.98 16 11 O -0.66 -39.19 15.82 -5.10 -0.08 -39.28 16 12 N -0.71 -38.71 5.55 -483.21 -2.68 -41.39 16 13 C 0.25 14.57 4.50 85.64 0.38 14.95 16 14 C -0.55 -34.54 9.83 25.60 0.25 -34.28 16 15 H 0.05 3.49 7.84 -2.91 -0.02 3.47 16 16 C 0.03 1.77 5.47 84.66 0.46 2.24 16 17 N -0.93 -59.03 13.96 21.45 0.30 -58.73 16 18 Si 0.94 47.94 27.47 68.60 1.88 49.82 16 19 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.26 -13.57 6.54 99.48 0.65 -12.92 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 23 H 0.04 1.11 7.56 -2.39 -0.02 1.09 16 24 H 0.10 0.96 8.08 -2.39 -0.02 0.95 16 25 H 0.23 -1.38 8.06 -2.91 -0.02 -1.40 16 26 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 27 H 0.10 4.14 6.36 -2.91 -0.02 4.12 16 28 H 0.40 20.47 8.42 -92.71 -0.78 19.69 16 29 H 0.01 0.62 7.20 -2.38 -0.02 0.61 16 30 H 0.00 0.04 7.57 -2.39 -0.02 0.02 16 31 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -100.96 272.94 0.06 -100.90 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -0.49 Total: 4.43 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 5.22 Total: 21.30 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -6.48 Total: -137.18 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.08 Total: -39.28 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.88 Total: 49.82 kcal Total: -100.96 0.06 -100.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335168482.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.124 kcal (2) G-P(sol) polarization free energy of solvation -100.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds