Wall clock time and date at job start Sun Mar 29 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.31407 * 119.99813 * 2 1 4 4 C 1.41633 * 119.69016 * 180.02562 * 3 2 1 5 5 C 1.35510 * 119.45291 * 180.02562 * 4 3 2 6 6 C 1.46402 * 118.87510 * 359.97438 * 5 4 3 7 7 C 1.47278 * 120.31187 * 180.02562 * 6 5 4 8 8 O 1.21635 * 119.99720 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00495 * 359.97438 * 7 6 5 10 10 C 1.46490 * 120.00331 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47244 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00097 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99724 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99529 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00421 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46843 * 90.00607 * 15 13 11 17 17 H 1.48497 * 109.47145 * 210.00278 * 15 13 11 18 18 H 1.48494 * 109.47146 * 330.00616 * 15 13 11 19 19 C 1.37829 * 119.37200 * 0.02562 * 6 5 4 20 20 N 1.34792 * 120.48184 * 0.27871 * 19 6 5 21 21 H 0.97006 * 119.40364 * 179.70410 * 20 19 6 22 22 H 1.09006 * 109.46593 * 299.99850 * 1 2 3 23 23 H 1.08993 * 109.47357 * 60.00208 * 1 2 3 24 24 H 1.08998 * 109.46711 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.27654 * 359.97438 * 4 3 2 26 26 H 1.07998 * 120.56473 * 180.02562 * 5 4 3 27 27 H 0.97002 * 119.99519 * 359.97438 * 9 7 6 28 28 H 1.09004 * 109.47180 * 299.99387 * 10 9 7 29 29 H 1.09003 * 109.47402 * 59.99406 * 10 9 7 30 30 H 0.97002 * 119.99961 * 179.97438 * 14 13 11 31 31 H 1.08002 * 119.75451 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1221 1.1380 0.0000 4 6 3.5384 1.1304 -0.0006 5 6 4.2110 2.3068 0.0000 6 6 3.4490 3.5569 0.0005 7 6 4.1478 4.8533 0.0006 8 8 3.5090 5.8885 0.0005 9 7 5.4950 4.8929 0.0006 10 6 6.1900 6.1824 0.0000 11 6 7.6791 5.9506 0.0008 12 1 8.0688 4.9434 0.0020 13 6 8.5439 7.0244 0.0010 14 7 9.8434 6.8220 0.0022 15 14 7.8700 8.7665 -0.0004 16 1 7.6904 9.2289 1.3993 17 1 8.8228 9.6653 -0.7002 18 1 6.5611 8.7904 -0.7014 19 6 2.0716 3.5090 0.0010 20 7 1.4286 2.3243 0.0067 21 1 0.4587 2.3088 0.0113 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 4.0778 0.1948 -0.0006 26 1 5.2909 2.3219 -0.0008 27 1 6.0044 4.0674 0.0010 28 1 5.9102 6.7456 -0.8903 29 1 5.9100 6.7465 0.8897 30 1 10.4519 7.5774 0.0020 31 1 1.5033 4.4274 0.0019 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336747111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:59 Heat of formation + Delta-G solvation = -10.647654 kcal Electronic energy + Delta-G solvation = -15558.578748 eV Core-core repulsion = 12839.404298 eV Total energy + Delta-G solvation = -2719.174450 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.60436 -40.11217 -36.17748 -35.93232 -34.62278 -34.05460 -31.34696 -29.70956 -27.52814 -25.30041 -23.62225 -23.10164 -21.85852 -20.18345 -18.69292 -17.84454 -17.45824 -16.99306 -16.50592 -16.27407 -16.01788 -15.71646 -15.20740 -14.84608 -14.33392 -14.27253 -14.12495 -13.88814 -13.51950 -13.02053 -12.67146 -12.51145 -11.88959 -11.60851 -11.43226 -11.15409 -10.94065 -10.87882 -10.48905 -9.89360 -8.37002 -8.35888 -6.42806 -0.00463 0.31421 1.36924 1.39034 1.51499 1.83655 1.98629 2.32097 2.59534 2.73324 3.00118 3.42215 3.72090 3.94832 4.00844 4.13616 4.40719 4.54155 4.60471 4.84280 4.86167 5.05940 5.08829 5.25486 5.29575 5.33041 5.56081 5.69847 6.02693 6.13213 6.58538 6.89062 7.01451 7.19500 7.43510 8.78809 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.059731 B = 0.004747 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.656793 B = 5896.777240 C = 6344.985275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.634 5.634 3 C 0.392 3.608 4 C -0.166 4.166 5 C -0.015 4.015 6 C -0.274 4.274 7 C 0.565 3.435 8 O -0.603 6.603 9 N -0.702 5.702 10 C 0.232 3.768 11 C -0.547 4.547 12 H 0.060 0.940 13 C 0.025 3.975 14 N -0.933 5.933 15 Si 0.938 3.062 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.257 1.257 19 C 0.227 3.773 20 N -0.613 5.613 21 H 0.429 0.571 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.162 0.838 26 H 0.151 0.849 27 H 0.407 0.593 28 H 0.016 0.984 29 H 0.014 0.986 30 H 0.272 0.728 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.855 -9.528 0.003 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.362 5.362 3 C 0.127 3.873 4 C -0.188 4.188 5 C -0.039 4.039 6 C -0.286 4.286 7 C 0.354 3.646 8 O -0.487 6.487 9 N -0.351 5.351 10 C 0.109 3.891 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.175 4.175 14 N -0.571 5.571 15 Si 0.762 3.238 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.181 1.181 19 C 0.092 3.908 20 N -0.230 5.230 21 H 0.269 0.731 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.180 0.820 26 H 0.169 0.831 27 H 0.243 0.757 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.040 -9.790 0.005 20.525 hybrid contribution -0.273 1.189 0.014 1.220 sum -18.313 -8.601 0.018 20.232 Atomic orbital electron populations 1.22188 0.87816 1.03611 1.00316 1.73393 1.10102 1.21024 1.31683 1.20425 0.94012 0.81105 0.91781 1.20744 0.89508 0.99632 1.08914 1.22363 1.00740 0.89922 0.90861 1.20076 0.93161 0.92603 1.22727 1.18138 0.82111 0.88671 0.75643 1.90705 1.67075 1.36395 1.54548 1.45864 1.05852 1.10462 1.72945 1.19119 0.90964 0.83141 0.95919 1.21315 0.89713 0.94936 1.52488 0.92232 1.25614 0.94830 1.03440 0.93620 1.69990 1.03095 1.33229 1.50836 0.85843 0.79057 0.79485 0.79434 1.19015 1.20080 1.18122 1.22254 0.92986 0.90059 0.85488 1.42715 1.11671 1.04544 1.64119 0.73088 0.92610 0.92598 0.89916 0.82042 0.83139 0.75685 0.96643 0.96769 0.91923 0.79119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.95 127.77 1.27 1.44 16 2 N -0.63 -14.47 10.94 -366.32 -4.01 -18.47 16 3 C 0.39 8.36 7.46 134.52 1.00 9.36 16 4 C -0.17 -3.54 9.97 22.48 0.22 -3.31 16 5 C -0.01 -0.33 9.73 23.77 0.23 -0.10 16 6 C -0.27 -7.17 6.02 -18.87 -0.11 -7.29 16 7 C 0.56 20.36 7.76 86.62 0.67 21.03 16 8 O -0.60 -25.44 16.32 -4.14 -0.07 -25.51 16 9 N -0.70 -27.55 5.51 -470.24 -2.59 -30.14 16 10 C 0.23 11.16 4.50 85.64 0.38 11.54 16 11 C -0.55 -29.76 9.83 25.60 0.25 -29.50 16 12 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 13 C 0.03 1.40 5.47 84.65 0.46 1.86 16 14 N -0.93 -55.33 13.96 21.45 0.30 -55.03 16 15 Si 0.94 43.36 27.47 68.60 1.88 45.25 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.26 -11.66 6.54 99.48 0.65 -11.01 16 19 C 0.23 4.47 10.77 84.14 0.91 5.38 16 20 N -0.61 -10.08 5.18 -191.40 -0.99 -11.07 16 21 H 0.43 4.50 7.00 -92.70 -0.65 3.85 16 22 H 0.06 0.72 7.90 -2.38 -0.02 0.70 16 23 H 0.06 0.72 7.92 -2.39 -0.02 0.71 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 26 H 0.15 3.05 6.59 -2.91 -0.02 3.03 16 27 H 0.41 13.99 6.43 -92.71 -0.60 13.40 16 28 H 0.02 0.78 7.20 -2.38 -0.02 0.77 16 29 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 30 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.19 3.13 7.60 -2.91 -0.02 3.11 16 Total: -1.00 -69.84 272.15 -0.31 -70.15 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.13 Total: 14.40 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.30 Total: 10.41 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -7.29 Total: -114.70 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.07 Total: -25.51 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Total: -69.84 -0.31 -70.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336747111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.500 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds